Replcae new csv with recalibrated.csv to recycle more

nf-core · May 4, 2022 · e3868b4 · e3868b4
1 parent b257ac3
commit e3868b4
Show file tree

Hide file tree

Showing 2 changed files with 1 addition and 6 deletions.
diff --git a/conf/test.config b/conf/test.config
@@ -140,7 +140,7 @@ profiles {
         params.use_gatk_spark      = 'baserecalibrator,markduplicates'
     }
     variantcalling_channels {
-        params.input               = "${baseDir}/tests/csv/3.0/variantcalling_channels.csv"
+        params.input               = "${baseDir}/tests/csv/3.0/recalibrated.csv"
         params.fasta               = "${params.genomes_base}/data/genomics/homo_sapiens/genome/chr21/sequence/genome.fasta"
         params.wes                 = true
         params.step                = 'variant_calling'

diff --git a/tests/csv/3.0/variantcalling_channels.csv b/tests/csv/3.0/variantcalling_channels.csv