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small bug in main.nf line 439 #292

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chelauk opened this issue Oct 15, 2020 · 1 comment · Fixed by #293
Closed

small bug in main.nf line 439 #292

chelauk opened this issue Oct 15, 2020 · 1 comment · Fixed by #293
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@chelauk
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chelauk commented Oct 15, 2020

sarek/main.nf

Line 439 in 0e111eb

if (params.annotate_tools) summary['Tools to annotate'] = annotate_tools.join(', ')

should be

if (params.annotate_tools) summary['Tools to annotate'] = params.annotate_tools.join(', ')

I think

@maxulysse
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annotateTools = params.annotate_tools ? params.annotate_tools.split(',').collect{it.trim().toLowerCase().replaceAll('-', '')} : []

actually the error is here, this annotateTools should be annotate_tools.

I'll make a PR for it, thanks for spotting that

@maxulysse maxulysse mentioned this issue Oct 16, 2020
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@maxulysse maxulysse linked a pull request Oct 16, 2020 that will close this issue
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@maxulysse maxulysse self-assigned this Oct 16, 2020
@maxulysse maxulysse added the bug Something isn't working label Oct 16, 2020
@maxulysse maxulysse added this to the 2.6.2 milestone Oct 16, 2020
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