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Change the content of the patient- and sample-fields in tests/csv/3.0/mapped_joint_bam.csvso that they correspond to the ids in the bam-files, that is, test -> testN and test1 -> testT:
Description of the bug
https://nfcore.slack.com/archives/C02MDBZAYJK/p1669641933059249
Change the content of the patient- and sample-fields in
tests/csv/3.0/mapped_joint_bam.csv
so that they correspond to the ids in the bam-files, that is,test
->testN
andtest1
->testT
:This change will probably also require that some md5sums in
tests/test_haplotypecaller.yml
are updated.Command used and terminal output
No response
Relevant files
No response
System information
No response
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