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FIX: VCFTOOLS public ecr registry #1058

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merged 2 commits into from
Jun 1, 2023
Merged

FIX: VCFTOOLS public ecr registry #1058

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95c4f44
use biocontainer provided container
maxulysse Jun 1, 2023
ff45cfb
update CHANGELOG
maxulysse Jun 1, 2023
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -71,6 +71,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- [#1043](https://github.com/nf-core/sarek/pull/1043) - Fix typo in the tags.yml files from [#978](https://github.com/nf-core/sarek/pull/978)
- [#1048](https://github.com/nf-core/sarek/pull/1048) - Skip tool validation on annotation to fix [#949](https://github.com/nf-core/sarek/issues/949), check that bam is bam and cram is cram [#895](https://github.com/nf-core/sarek/issues/895)
- [#1050](https://github.com/nf-core/sarek/pull/1050) - Disable GATK VCF filters when joint calling to fix [#1025](https://github.com/nf-core/sarek/issues/1025)
- [#1058](https://github.com/nf-core/sarek/pull/1058) - Fix container declaration for VCFTOOLS as it has been updated in the registry

### Removed

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3 changes: 0 additions & 3 deletions conf/public_aws_ecr.config
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Expand Up @@ -54,7 +54,4 @@ process {
withName: 'UNZIP' {
container = 'quay.io/biocontainers/p7zip:16.02'
}
withName: 'VCFTOOLS' {
container = 'public.ecr.aws/biocontainers/vcftools:0.1.16--pl5321hd03093a_7'
}
}