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added missing output documentation for ASCATprofile.png #1192

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merged 2 commits into from
Aug 25, 2023
Merged

added missing output documentation for ASCATprofile.png #1192

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8b284a2
added missing output documentation for ASCATprofile.png
JohannesKersting Aug 25, 2023
21dbabd
updated CHANGELOG.md
JohannesKersting Aug 25, 2023
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -46,6 +46,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- [#1177](https://github.com/nf-core/sarek/pull/1177) - Fix status inference when using nf-validation plugin
- [#1183](https://github.com/nf-core/sarek/pull/1183) - Add docs for concatentated germline variants
- [#1184](https://github.com/nf-core/sarek/pull/1184) - Fix issue with duplicated variants in VCF from Sentieon-based joint-germline variant-calling with VQSR. (Corresponding to [#966](https://github.com/nf-core/sarek/issues/966) for GATK.)
- [#1192](https://github.com/nf-core/sarek/pull/1192) - Add `ASCATprofile.png` to ASCAT output docs

### Dependencies

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2 changes: 2 additions & 0 deletions docs/output.md
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Expand Up @@ -598,6 +598,8 @@ This is done internally using the software [AlleleCount](https://github.com/canc

**Output directory: `{outdir}/variantcalling/ascat/<tumorsample_vs_normalsample>/`**

- `<tumorsample_vs_normalsample>.tumour.ASCATprofile.png`
- image with information about allele-specific copy number profile
- `<tumorsample_vs_normalsample>.tumour.ASPCF.png`
- image with information about allele-specific copy number segmentation
- `<tumorsample_vs_normalsample>.before_correction_Tumour.<tumorsample_vs_normalsample>.tumour.png`
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