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Overhaul GHA #1200

Merged
merged 29 commits into from
Sep 1, 2023
Merged

Overhaul GHA #1200

merged 29 commits into from
Sep 1, 2023

Commits on Aug 31, 2023

  1. Tidy workflows into one testing workflow

    @adamrtalbot
    adamrtalbot committed Aug 31, 2023
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  2. Tidy up AWS tests into single workflow

    @adamrtalbot
    adamrtalbot committed Aug 31, 2023
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  3. Condense linting workflows to single workflow

    @adamrtalbot
    adamrtalbot committed Aug 31, 2023
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  4. Add confirm-pass check to the end of the testing workflow

    @adamrtalbot
    adamrtalbot committed Aug 31, 2023
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  5. [automated] Fix linting with Prettier

    @nf-core-bot @adamrtalbot
    nf-core-bot authored and adamrtalbot committed Aug 31, 2023
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  6. Add Sentieon secret back in

    @adamrtalbot
    adamrtalbot committed Aug 31, 2023
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  7. Fix tags for alignment checks

    @adamrtalbot
    adamrtalbot committed Aug 31, 2023
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  8. Add default test to list of existing tags

    @adamrtalbot
    adamrtalbot committed Aug 31, 2023
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  9. Add merge group in case of a merge queue

    @adamrtalbot
    adamrtalbot committed Aug 31, 2023
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  10. Setup Cache for Nextflow and Pip

    @adamrtalbot
    adamrtalbot committed Aug 31, 2023
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  11. Revert "Condense linting workflows to single workflow" 

    This reverts commit d1b3f4e.
    @adamrtalbot
    adamrtalbot committed Aug 31, 2023
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  12. unique-ify the installation cache key

    @adamrtalbot
    adamrtalbot committed Aug 31, 2023
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  13. Use git commands instead of GHA CLI to check for path differences

    @adamrtalbot
    adamrtalbot committed Aug 31, 2023
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  14. Use explicit requirements.txt file

    @adamrtalbot
    adamrtalbot committed Aug 31, 2023
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  15. Remove blank token from paths-filter

    @adamrtalbot
    adamrtalbot committed Aug 31, 2023
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  16. lint requirements.txt

    @adamrtalbot
    adamrtalbot committed Aug 31, 2023
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  17. Merge branch 'dev' of github.com:nf-core/sarek into overhaul_ci_gha

    @adamrtalbot
    adamrtalbot committed Aug 31, 2023
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Commits on Sep 1, 2023

  1. Update .github/workflows/pytest-workflow.yml

    @adamrtalbot
    adamrtalbot authored Sep 1, 2023
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  2. Match CI triggers to nf-core schema

    @adamrtalbot
    adamrtalbot committed Sep 1, 2023
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  3. CHANGELOG

    @adamrtalbot
    adamrtalbot committed Sep 1, 2023
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  4. Rely on setup-python auto cacheing feature instead of manual cacheing

    @adamrtalbot
    adamrtalbot committed Sep 1, 2023
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  5. fixup

    @adamrtalbot
    adamrtalbot committed Sep 1, 2023
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  6. fixup

    @adamrtalbot
    adamrtalbot committed Sep 1, 2023
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  7. Change order to install test data after software dependencies (fail e… 

    …arlier)
    @adamrtalbot
    adamrtalbot committed Sep 1, 2023
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  8. Change triggers for AWS tests

    @adamrtalbot
    adamrtalbot committed Sep 1, 2023
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  9. Change triggers for AWS tests

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    adamrtalbot committed Sep 1, 2023
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  10. Change triggers for AWS tests

    @adamrtalbot
    adamrtalbot committed Sep 1, 2023
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  11. Change triggers for AWS tests

    @adamrtalbot
    adamrtalbot committed Sep 1, 2023
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  12. Change triggers for AWS tests

    @adamrtalbot
    adamrtalbot committed Sep 1, 2023
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