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FIX: Singularity error on test profiles #1203

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merged 2 commits into from
Aug 31, 2023
Merged

FIX: Singularity error on test profiles #1203

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b6092b8
remove params.singularity_pull_docker_container from test profiles
maxulysse Aug 31, 2023
73bb2b0
update CHANGELOG
maxulysse Aug 31, 2023
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5 changes: 3 additions & 2 deletions CHANGELOG.md
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Expand Up @@ -51,8 +51,9 @@ Rapaselet is a delta formed by the Rapaätno river between the Bielloriehppe mas
- [#1183](https://github.com/nf-core/sarek/pull/1183) - Add docs for concatentated germline variants
- [#1184](https://github.com/nf-core/sarek/pull/1184) - Fix issue with duplicated variants in VCF from Sentieon-based joint-germline variant-calling with VQSR. (Corresponding to [#966](https://github.com/nf-core/sarek/issues/966) for GATK.)
- [#1192](https://github.com/nf-core/sarek/pull/1192) - Add `ASCATprofile.png` to ASCAT output docs
- [#1197](https://github.com/nf-core/sarek/pull/1197) - Improve `tower.yml` file to display reports in `Tower` ([#1190](https://github.com/nf-core/sarek/issues/1190))
- [#1202](https://github.com/nf-core/sarek/pull/1202) - Remove GitHub action step that caches Nextflow. Also bump other out of date actions.
- [#1197](https://github.com/nf-core/sarek/pull/1197) - Improve `tower.yml` file to display reports in Tower ([#1190](https://github.com/nf-core/sarek/issues/1190))
- [#1202](https://github.com/nf-core/sarek/pull/1202) - Remove GitHub action step that caches Nextflow and bump other out of date actions
- [#1203](https://github.com/nf-core/sarek/pull/1203) - Fix issue with Singularity containers on test profiles

### Dependencies

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1 change: 0 additions & 1 deletion conf/test.config
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Expand Up @@ -103,7 +103,6 @@ if (System.getenv('PROFILE')) {
singularity.enabled = false
} else if ("$PROFILE" == "singularity") {
conda.enabled = false
params.singularity_pull_docker_container = false
singularity.autoMounts = true
singularity.enabled = true
charliecloud.enabled = false
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1 change: 0 additions & 1 deletion conf/test/cache.config
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Expand Up @@ -119,7 +119,6 @@ if (System.getenv('PROFILE')) {
singularity.enabled = false
} else if ("$PROFILE" == "singularity") {
conda.enabled = false
params.singularity_pull_docker_container = false
singularity.autoMounts = true
singularity.enabled = true
charliecloud.enabled = false
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