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minor nf test fixes #1290

Merged
merged 5 commits into from
Oct 17, 2023
Merged

minor nf test fixes #1290

merged 5 commits into from
Oct 17, 2023

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adamrtalbot
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  • Add .gitignore to files_unchanged
  • Minor fixes for nf-test

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/sarek branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@adamrtalbot adamrtalbot marked this pull request as draft October 17, 2023 14:38
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github-actions bot commented Oct 17, 2023 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit d9b2293

+| ✅ 144 tests passed       |+
#| ❔   9 tests were ignored |#
!| ❗   1 tests had warnings |!

❗ Test warnings:

  • pipeline_todos - TODO string in WorkflowSarek.groovy: Optionally add in-text citation tools to this list.

❔ Tests ignored:

  • files_exist - File is ignored: .github/workflows/awsfulltest.yml
  • files_exist - File is ignored: conf/modules.config
  • files_unchanged - File ignored due to lint config: assets/nf-core-sarek_logo_light.png
  • files_unchanged - File ignored due to lint config: docs/images/nf-core-sarek_logo_light.png
  • files_unchanged - File ignored due to lint config: docs/images/nf-core-sarek_logo_dark.png
  • files_unchanged - File ignored due to lint config: lib/NfcoreTemplate.groovy
  • files_unchanged - File ignored due to lint config: .gitignore or .prettierignore or pyproject.toml
  • actions_ci - actions_ci
  • template_strings - template_strings

✅ Tests passed:

Run details

  • nf-core/tools version 2.10
  • Run at 2023-10-17 14:57:09

@adamrtalbot adamrtalbot marked this pull request as ready for review October 17, 2023 15:47
adamrtalbot
adamrtalbot commented Oct 17, 2023
View reviewed changes
CHANGELOG.md Outdated Show resolved Hide resolved
@adamrtalbot adamrtalbot merged commit 62ea737 into nf-core:dev Oct 17, 2023
6 checks passed
@adamrtalbot adamrtalbot deleted the minor-nf-test-fixes branch October 17, 2023 15:49
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@maxulysse maxulysse maxulysse approved these changes

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