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Important! Template update for nf-core/tools v2.14.1 #1518

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merged 5 commits into from
May 10, 2024
Merged

Important! Template update for nf-core/tools v2.14.1 #1518

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84900cb
Template update for nf-core/tools version 2.13.2.dev0
mashehu May 8, 2024
8bb7d5b
Template update for nf-core/tools version 2.14.0
nf-core-bot May 8, 2024
ca4c0e1
Template update for nf-core/tools version 2.14.1
nf-core-bot May 9, 2024
a979ee5
Merge branch 'dev' into nf-core-template-merge-2.14.1
maxulysse May 10, 2024
563294f
Update CHANGELOG.md
maxulysse May 10, 2024
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2 changes: 1 addition & 1 deletion .github/PULL_REQUEST_TEMPLATE.md
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Expand Up @@ -18,7 +18,7 @@ Learn more about contributing: [CONTRIBUTING.md](https://github.com/nf-core/sare
- [ ] If you've added a new tool - have you followed the pipeline conventions in the [contribution docs](https://github.com/nf-core/sarek/tree/master/.github/CONTRIBUTING.md)
- [ ] If necessary, also make a PR on the nf-core/sarek _branch_ on the [nf-core/test-datasets](https://github.com/nf-core/test-datasets) repository.
- [ ] Make sure your code lints (`nf-core lint`).
- [ ] Ensure the test suite passes (`nf-test test tests/ --verbose --profile +docker`).
- [ ] Ensure the test suite passes (`nextflow run . -profile test,docker --outdir <OUTDIR>`).
- [ ] Check for unexpected warnings in debug mode (`nextflow run . -profile debug,test,docker --outdir <OUTDIR>`).
- [ ] Usage Documentation in `docs/usage.md` is updated.
- [ ] Output Documentation in `docs/output.md` is updated.
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1 change: 0 additions & 1 deletion .github/workflows/linting.yml
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Expand Up @@ -20,7 +20,6 @@ jobs:
uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5
with:
python-version: "3.12"
cache: "pip"

- name: Install pre-commit
run: pip install pre-commit
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2 changes: 1 addition & 1 deletion .nf-core.yml
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@@ -1,5 +1,5 @@
repository_type: pipeline
nf_core_version: "2.14.0"
nf_core_version: "2.14.1"
lint:
actions_ci: False
files_exist:
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3 changes: 2 additions & 1 deletion CHANGELOG.md
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Expand Up @@ -5,14 +5,15 @@ All notable changes to this project will be documented in this file.
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## dev
## v3.5.0dev - [date]
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### Added

### Changed

- [#1508](https://github.com/nf-core/sarek/pull/1508) - Sync `TEMPLATE` with `tools` `2.14.0`
- [#1513](https://github.com/nf-core/sarek/pull/1513) - Back to dev
- [#1518](https://github.com/nf-core/sarek/pull/1518) - Sync `TEMPLATE` with `tools` `2.14.1`

### Fixed

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