Works with Nextflow.20.06.0 edge and has optional processes #244
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maxulysse
requested review from
FriederikeHanssen and
ggabernet
and removed request for
FriederikeHanssen
| if (!(params.bwa) && params.fasta && 'mapping' in step) | ||
| result_bwa = BWAMEM2_INDEX(fasta) | ||
| else | ||
| result_bwa = Channel.empty() |
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Glad it works like this, but unhappy with the optics
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We'll improve it at some point
FriederikeHanssen
approved these changes
Jul 16, 2020
| def command = "nextflow run nf-core/sarek --input sample.tsv -profile docker" | ||
| log.info Headers.nf_core(workflow, params.monochrome_logs) | ||
| log.info Schema.params_help("$baseDir/nextflow_schema.json", command) | ||
| exit 0 |
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Why is this removed?
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Moved it back to the top, and just removed the Headers part from it, I think it's useless in the help context
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nf-core/sarek pull request
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nextflow run . -profile test,docker).nf-core lint .).docsis updatedCHANGELOG.mdis updatedREADME.mdis updatedLearn more about contributing: CONTRIBUTING.md