tiny fixes and update logo and publications #284
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mashehu
reviewed
Sep 28, 2020
| "fa_icon": "fas fa-cut", | ||
| "description": "Run Trim Galore" | ||
| "description": "Run Trim Galore", |
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Suggested change
| "description": "Run Trim Galore", | |
| "description": "Run Trim Galore.", |
mashehu
reviewed
Sep 28, 2020
| }, | ||
| "clip_r1": { | ||
| "type": "integer", | ||
| "fa_icon": "fas fa-cut", | ||
| "description": "Remove bp from the 5' end of read 1", | ||
| "help_text": "With Trim Galore" | ||
| "help_text": "With Trim Galore", |
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not a very helpful text, in my opinion. Would easily also fit into the description.
mashehu
reviewed
Sep 28, 2020
| "fa_icon": "fas fa-cut", | ||
| "description": "Run Trim Galore" | ||
| "description": "Run Trim Galore", | ||
| "hidden": true | ||
| }, | ||
| "clip_r1": { | ||
| "type": "integer", | ||
| "fa_icon": "fas fa-cut", | ||
| "description": "Remove bp from the 5' end of read 1", |
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Suggested change
| "description": "Remove bp from the 5' end of read 1", | |
| "description": "Number of bp removed from the 5' end of read 1.", |
mashehu
reviewed
Sep 28, 2020
| "fa_icon": "fas fa-save", | ||
| "description": "Specify how many reads should be contained in the split FastQ file", | ||
| "help_text": "If none specified, FastQs won't be split" | ||
| "description": "Save trimmed FastQ file intermediates", |
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Suggested change
| "description": "Save trimmed FastQ file intermediates", | |
| "description": "Save trimmed FastQ file intermediates.", |
mashehu
reviewed
Sep 28, 2020
| "description": "Specify how many reads should be contained in the split FastQ file", | ||
| "help_text": "If none specified, FastQs won't be split" | ||
| "description": "Save trimmed FastQ file intermediates", | ||
| "help_text": "If none specified, FastQs won't be split", |
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Suggested change
| "help_text": "If none specified, FastQs won't be split", | |
| "help_text": "If none specified, FastQs won't be split.", |
mashehu
reviewed
Sep 28, 2020
| "fa_icon": "fas fa-cut", | ||
| "description": "Save trimmed FastQ file intermediates", | ||
| "help_text": "If not used, FastQs won't be split" | ||
| "description": "Specify how many reads should be contained in the split FastQ file", |
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Suggested change
| "description": "Specify how many reads should be contained in the split FastQ file", | |
| "description": "Specify how many reads should be contained in the split FastQ file.", |
mashehu
reviewed
Sep 28, 2020
| }, | ||
| "markdup_java_options": { | ||
| "type": "string", | ||
| "default": "-Xms4000m -Xmx7g", | ||
| "fa_icon": "fas fa-memory", | ||
| "description": "Establish values for GATK MarkDuplicates memory consumption", | ||
| "help_text": "See https://github.com/SciLifeLab/Sarek/pull/689" | ||
| "help_text": "See https://github.com/SciLifeLab/Sarek/pull/689", |
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Suggested change
| "help_text": "See https://github.com/SciLifeLab/Sarek/pull/689", | |
| "help_text": "See [https://github.com/SciLifeLab/Sarek/pull/689](https://github.com/SciLifeLab/Sarek/pull/689)", |
|
@mashehu thanks for the comments, I'll make another PR with the |
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nf-core/sarek pull request
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nextflow run . -profile test,docker).nf-core lint .).docsis updatedCHANGELOG.mdis updatedREADME.mdis updatedLearn more about contributing: CONTRIBUTING.md