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Add test_data config magic #465

Merged
merged 2 commits into from
Dec 8, 2021
Merged

Add test_data config magic #465

merged 2 commits into from
Dec 8, 2021

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edmundmiller
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Avoids the need to list all of the stuff in test_data.config from modules and just pulls in the config from the url.

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github-actions bot commented Dec 7, 2021 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit bfb0b7a

+| ✅ 135 tests passed       |+
#| ❔   6 tests were ignored |#
!| ❗   5 tests had warnings |!

❗ Test warnings:

  • pipeline_todos - TODO string in awsfulltest.yml: You can customise AWS full pipeline tests as required
  • pipeline_todos - TODO string in test_full.config: Specify the paths to your full test data ( on nf-core/test-datasets or directly in repositories, e.g. SRA)
  • pipeline_todos - TODO string in test_full.config: Give any required params for the test so that command line flags are not needed
  • pipeline_todos - TODO string in test_full.config: Specify the paths to your full test data ( on nf-core/test-datasets or directly in repositories, e.g. SRA)
  • pipeline_todos - TODO string in test_full.config: Give any required params for the test so that command line flags are not needed

❔ Tests ignored:

  • files_unchanged - File ignored due to lint config: .github/workflows/linting.yml
  • files_unchanged - File ignored due to lint config: assets/nf-core-sarek_logo_light.png
  • files_unchanged - File ignored due to lint config: docs/images/nf-core-sarek_logo_light.png
  • files_unchanged - File ignored due to lint config: docs/images/nf-core-sarek_logo_dark.png
  • files_unchanged - File ignored due to lint config: lib/NfcoreTemplate.groovy
  • files_unchanged - File ignored due to lint config: assets/multiqc_config.yaml

✅ Tests passed:

Run details

  • nf-core/tools version 2.2.dev0
  • Run at 2021-12-07 19:13:59

@maxulysse maxulysse merged commit 84c6e1b into nf-core:dev Dec 8, 2021
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@maxulysse maxulysse maxulysse approved these changes

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2 participants
@edmundmiller @maxulysse