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Dev #473

Closed
wants to merge 19 commits into from
Closed

Dev #473

wants to merge 19 commits into from

Commits on Dec 13, 2021

  1. fix interval name and boolean flag 

    linting

update publishDir

linting
    Smith Nicholas committed Dec 13, 2021
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  2. merge nf-core-dev -> nickhsmith/dev

    Smith Nicholas committed Dec 13, 2021
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  3. Merge branch 'nf-core-dev' into dev

    Smith Nicholas committed Dec 13, 2021
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  4. rename preparerecalibration and variantcalling

    Smith Nicholas committed Dec 13, 2021
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  5. rearrange gatk haplotypecaller args

    Smith Nicholas committed Dec 13, 2021
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  6. fix type interval_bed -> intervals_bed

    Smith Nicholas committed Dec 13, 2021
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  7. don't assume '_' in name, take all vcf.gz

    Smith Nicholas committed Dec 13, 2021
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  8. remove old params, set somee string defaults to null

    Smith Nicholas committed Dec 13, 2021
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Commits on Dec 14, 2021

  1. Update .gitignore

    @nickhsmith
    nickhsmith authored Dec 14, 2021
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  2. Update conf/modules.config 

    Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
    @nickhsmith @FriederikeHanssen
    nickhsmith and FriederikeHanssen authored Dec 14, 2021
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  3. Update conf/modules.config 

    Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
    @nickhsmith @FriederikeHanssen
    nickhsmith and FriederikeHanssen authored Dec 14, 2021
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Commits on Jan 5, 2022

  1. update germline interval naming

    Smith Nicholas committed Jan 5, 2022
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  2. Merge branch 'dev' of github.com:nickhsmith/sarek into dev

    Smith Nicholas committed Jan 5, 2022
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Commits on Jan 12, 2022

  1. update nf-core-branch

    Smith Nicholas committed Jan 12, 2022
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  2. Merge branch 'nf-core-dev' into dev

    Smith Nicholas committed Jan 12, 2022
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Commits on Jan 14, 2022

  1. fix to match nf-core updates

    Smith Nicholas committed Jan 14, 2022
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Commits on Feb 14, 2022

  1. update

    Smith Nicholas committed Feb 14, 2022
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  2. merge with nf-core-dev

    Smith Nicholas committed Feb 14, 2022
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  3. Merge pull request #5 from nickhsmith/nf-core-dev 

    Nf core dev
    @nickhsmith
    nickhsmith authored Feb 14, 2022
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