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Added somatic cnvkit #540
Added somatic cnvkit #540
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Hi @SusiJo nice work! I couldn't get it to run in full, I mean the whole Sarek from fastq with this commit, but that's because I'm a little behind on having a test-bench for the latest of the latest. I'll work with that over the next few days. But don't let that hold you back, I think this somatic setup is absolutely what is needed and as far as I can tell from the code it looks solid what you've made.
I adjusted the order in the |
PR checklist
scrape_software_versions.py
nf-core lint .
).nextflow run . -profile test,docker
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).