Merging template updates 2.4

[FriederikeHanssen]

PR checklist

• This comment contains a description of changes (with reason).
• If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - add to the software_versions process and a regex to scrape_software_versions.py
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/sarek branch on the nf-core/test-datasets repository.
• Make sure your code lints (nf-core lint .).
• Ensure the test suite passes (nextflow run . -profile test,docker).
• Usage Documentation in docs/usage.md is updated.
• Output Documentation in docs/output.md is updated.
• CHANGELOG.md is updated.
• README.md is updated (including new tool citations and authors/contributors).

[maxulysse]

How come nf-core lint is failing?

[FriederikeHanssen]

Modules updates

 ╭─ [✗] 1 Module Test Failed ───────────────────────────────────────────────────╮
│                                           ╷                ╷                 │
│ Module name                               │ File path      │ Test message    │
│╶──────────────────────────────────────────┼────────────────┼────────────────╴│
│ ascat                                     │ modules/nf-co… │ Local copy of   │
│                                           │                │ module does not │
│                                           │                │ match remote    │
│                                           ╵                ╵                 │
╰──────────────────────────────────────────────────────────────────────────────╯

I messed around with the module at osme point. But @SusiJo is working on the CNV stuff now, so I don't want to touch it and create merge conflicts for her

[FriederikeHanssen]

Good thing though that linting fails with informative errors again, so The GH fix is working