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Updated module deeptools/bamcoverage #578

Merged
merged 2 commits into from
Jun 8, 2022
Merged

Updated module deeptools/bamcoverage #578

merged 2 commits into from
Jun 8, 2022

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SusiJo
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@SusiJo SusiJo commented Jun 7, 2022

PR checklist

This PR updates the module deeptools/bamcoverage to convert cram to bam before running the bamcoverage.

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
    • If you've added a new tool - add to the software_versions process and a regex to scrape_software_versions.py
    • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
    • If necessary, also make a PR on the nf-core/sarek branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint .).
  • Ensure the test suite passes (nextflow run . -profile test,docker).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@SusiJo SusiJo requested a review from maxulysse as a code owner June 7, 2022 08:57
@maxulysse maxulysse merged commit 4ec6c48 into nf-core:dev Jun 8, 2022
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@maxulysse maxulysse maxulysse approved these changes

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@SusiJo @maxulysse