Code

Include new module ASCAT#606

Code

Merged

FriederikeHanssen merged 37 commits intonf-core:devnf-core/sarek:devfrom SusiJo:ascatSusiJo/sarek:ascatCopy head branch name to clipboardJul 1, 2022

+732-299

Commits

Commits on Jun 21, 2022

• add ascat locally

  SusiJo

  committed
  7a1b0ce

Commits on Jun 22, 2022

• install unzip

  SusiJo

  committed
  636f919

• add ascat genome string

  SusiJo

  committed
  5bb319f

• add unzip

  SusiJo

  committed
  5420559

• adjust format

  SusiJo

  committed
  0812d16

• add ascat stuff

  SusiJo

  committed
  7e569cd

• fix channels

  SusiJo

  committed
  77618e9

• quick fixes

  SusiJo

  committed
  60205c3

• quick fixes

  SusiJo

  committed
  e311941

• quick fixes

  SusiJo

  committed
  3aa4c01

• fix new params

  SusiJo

  committed
  052c40f

• fix ascat_params

  SusiJo

  committed
  e2d97d5

• quick fixes

  SusiJo

  committed
  798a43e

Commits on Jun 23, 2022

• test empty channel

  SusiJo

  committed
  0165763

• quick fixes

  SusiJo

  committed
  fe40602

• adjust gender, add stuff to test ascat locally

  SusiJo

  committed
  110a954

• Merge remote-tracking branch 'upstream/dev' into ascat

  SusiJo

  committed
  762b2cc

Commits on Jun 24, 2022

• installed new module ascat

  SusiJo

  committed
  8c306eb

• change order of channels

  SusiJo

  committed
  438b94c

• fix userEmulation closure

  SusiJo

  committed
  89833a2

• push working version

  SusiJo

  committed
  574f7bd

• updated to use igenomes

  SusiJo

  committed
  79b95c0

• fix loci input + add warnings

  SusiJo

  committed
  dd0426d

• add warnings

  SusiJo

  committed
  6b60a92

• add download link for reference files

  SusiJo

  committed
  125e5a3

• Merge remote-tracking branch 'origin/dev' into ascat

  SusiJo

  committed
  3ff0eb0

• Merge branch 'ascat' of https://github.com/SusiJo/sarek into ascat

  SusiJo

  committed
  66cf52a

Commits on Jun 27, 2022

• add params, ci tests, rm deprec. scripts, ch doc

  SusiJo

  committed
  eee5a24

• Merge remote-tracking branch 'origin/dev' into ascat

  SusiJo

  committed
  2411d1b

• quick fixes

  SusiJo

  committed
  15d06a2

• fix input channels of pair_var_calling

  SusiJo

  committed
  7ad291b

Commits on Jun 28, 2022

• update ascat module + docs

  SusiJo

  committed
  8250155

• making things prettier

  SusiJo

  committed
  d6fa962

Commits on Jun 29, 2022

• Merge remote-tracking branch 'origin/dev' into ascat

  SusiJo

  committed
  139f98e

• incorporate PR feedback

  SusiJo

  committed
  c5d5097

Commits on Jul 1, 2022

• Merge remote-tracking branch 'origin/dev' into ascat

  SusiJo

  committed
  b1fb569

• fixed ci tests

  SusiJo

  committed
  f09de9a