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Remove candidates from manta publishdir and tests #608

Merged
merged 2 commits into from
Jun 27, 2022
Merged

Remove candidates from manta publishdir and tests #608

merged 2 commits into from
Jun 27, 2022

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WackerO
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@WackerO WackerO commented Jun 27, 2022 •
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This PR stops candidate vcfs from being published.<!--

nf-core/sarek pull request

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Please fill in the appropriate checklist below (delete whatever is not relevant).
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Remember that PRs should be made against the dev branch, unless you're preparing a pipeline release.

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PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
    • If you've added a new tool - add to the software_versions process and a regex to scrape_software_versions.py
    • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
    • If necessary, also make a PR on the nf-core/sarek branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint .).
  • Ensure the test suite passes (nextflow run . -profile test,docker).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@WackerO WackerO requested a review from maxulysse as a code owner June 27, 2022 12:06
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github-actions bot commented Jun 27, 2022 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit d09b970

+| ✅ 145 tests passed       |+
#| ❔   4 tests were ignored |#
!| ❗   1 tests had warnings |!

❗ Test warnings:

  • readme - README did not have a Nextflow minimum version badge.

❔ Tests ignored:

  • files_unchanged - File ignored due to lint config: assets/nf-core-sarek_logo_light.png
  • files_unchanged - File ignored due to lint config: docs/images/nf-core-sarek_logo_light.png
  • files_unchanged - File ignored due to lint config: docs/images/nf-core-sarek_logo_dark.png
  • files_unchanged - File ignored due to lint config: lib/NfcoreTemplate.groovy

✅ Tests passed:

Run details

  • nf-core/tools version 2.4.1
  • Run at 2022-06-27 12:09:51

@FriederikeHanssen FriederikeHanssen merged commit 4a3601c into nf-core:dev Jun 27, 2022
@WackerO WackerO deleted the manta branch July 27, 2022 09:01
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@FriederikeHanssen FriederikeHanssen FriederikeHanssen approved these changes

@maxulysse maxulysse Awaiting requested review from maxulysse maxulysse is a code owner

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@WackerO @FriederikeHanssen