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Vep Issues: loftee needs version #706

Merged
merged 3 commits into from
Aug 16, 2022
Merged

Vep Issues: loftee needs version #706

merged 3 commits into from
Aug 16, 2022

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FriederikeHanssen
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PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
    • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
    • If necessary, also make a PR on the nf-core/sarek branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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github-actions bot commented Aug 16, 2022 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit eb4bc9c

+| ✅ 145 tests passed       |+
#| ❔   4 tests were ignored |#
!| ❗   1 tests had warnings |!

❗ Test warnings:

  • readme - README did not have a Nextflow minimum version badge.

❔ Tests ignored:

  • files_unchanged - File ignored due to lint config: assets/nf-core-sarek_logo_light.png
  • files_unchanged - File ignored due to lint config: docs/images/nf-core-sarek_logo_light.png
  • files_unchanged - File ignored due to lint config: docs/images/nf-core-sarek_logo_dark.png
  • files_unchanged - File ignored due to lint config: lib/NfcoreTemplate.groovy

✅ Tests passed:

Run details

  • nf-core/tools version 2.4.1
  • Run at 2022-08-16 17:29:36

@FriederikeHanssen FriederikeHanssen changed the title Vep Issues: loftee needs version & dbnsfp needs fasta Vep Issues: loftee needs version Aug 16, 2022
@FriederikeHanssen FriederikeHanssen marked this pull request as ready for review August 16, 2022 17:27
@maxulysse maxulysse merged commit cdf68a8 into nf-core:dev Aug 16, 2022
@FriederikeHanssen FriederikeHanssen deleted the loftee branch July 10, 2023 19:01
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@maxulysse maxulysse maxulysse approved these changes

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@FriederikeHanssen @maxulysse