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No scatteron full size tests to avoid issues with in or output files randomly not staged #782

Merged
merged 3 commits into from
Oct 10, 2022
Merged

No scatteron full size tests to avoid issues with in or output files randomly not staged #782

merged 3 commits into from
Oct 10, 2022

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FriederikeHanssen
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PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs- [ ] If necessary, also make a PR on the nf-core/sarek branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 2a93482

+| ✅ 154 tests passed       |+
#| ❔   4 tests were ignored |#
!| ❗   1 tests had warnings |!

❗ Test warnings:

  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your prefered methods description, e.g. add publication citation for this pipeline

❔ Tests ignored:

  • files_unchanged - File ignored due to lint config: assets/nf-core-sarek_logo_light.png
  • files_unchanged - File ignored due to lint config: docs/images/nf-core-sarek_logo_light.png
  • files_unchanged - File ignored due to lint config: docs/images/nf-core-sarek_logo_dark.png
  • files_unchanged - File ignored due to lint config: lib/NfcoreTemplate.groovy

✅ Tests passed:

Run details

  • nf-core/tools version 2.6
  • Run at 2022-10-10 15:23:37

edmundmiller
edmundmiller approved these changes Oct 10, 2022
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@edmundmiller edmundmiller left a comment

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LGTM!

@FriederikeHanssen FriederikeHanssen merged commit 81a6b04 into nf-core:dev Oct 10, 2022
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@edmundmiller edmundmiller edmundmiller approved these changes

@jfy133 jfy133 jfy133 approved these changes

@maxulysse maxulysse Awaiting requested review from maxulysse maxulysse is a code owner

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3 participants
@FriederikeHanssen @jfy133 @edmundmiller