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cellrangerarc test failing - null path? #374

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davhum opened this issue Oct 4, 2024 · 2 comments
Open

cellrangerarc test failing - null path? #374

davhum opened this issue Oct 4, 2024 · 2 comments
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bug Something isn't working cellranger-arc

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@davhum
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davhum commented Oct 4, 2024

Description of the bug

I am having trouble getting the following test to work. Any clues to what I am doing wrong.

The command I ran was:

nextflow run nf-core/scrnaseq -profile test,docker --outdir /mnt/bdsf/test_arc --aligner cellrangerarc

Output error (do you need more info?)

Pipeline completed with errors-
ERROR ~ Error executing process > 'NFCORE_SCRNASEQ:SCRNASEQ:FASTQC_CHECK:FASTQC (2)'

Caused by:
Path value cannot be null

Workflow:
nf-core/scrnaseq: v2.7.1-g4171377
Nextflow: 24.04.4

Command used and terminal output

No response

Relevant files

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System information

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@davhum davhum added the bug Something isn't working label Oct 4, 2024
@j-andrews7
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j-andrews7 commented Oct 8, 2024 •
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Also hitting this with the same versions and real data.

@grst
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grst commented Oct 28, 2024

Cellrangerarc is currently not properly tested, see #290.

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bug Something isn't working cellranger-arc
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@davhum @grst @j-andrews7