Cellranger v9

[marcus-tutert]

Description of feature

Hi,

I was wondering if scrnaseq could be updated with cellranger version 9? Specifically because I would like to use the on-chip 10X GEM-X multiplexing options which I believe are needing v9 to be used
https://www.10xgenomics.com/support/software/cell-ranger/latest/analysis/inputs/cr-multi-config-csv-opts#samples

[grst]

Totally! If you want it fast, we'd encourage you to submit a pull request ;)

First step would be to update the module on nf-core/modules.

[marcus-tutert]

Thanks, I'll start a draft PR if that works for you @grst -- would be great to have you walk me through some of the technical bits :)

[apeltzer]

please also make sure to disable telemetry as a default - this is new in v9:

export TENX_DISABLE_TELEMETRY=1

[apeltzer]

Containers are there already, you may simply open up a PR and get to it 👍🏻

[apeltzer]

PR open, but you need to do the modules - please take over nf-core/modules#7153 :-)