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Important! Template update for nf-core/tools v2.8 #221

Merged
merged 6 commits into from
May 22, 2023
Merged

Important! Template update for nf-core/tools v2.8 #221

merged 6 commits into from
May 22, 2023

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nf-core-bot
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Version 2.8 of nf-core/tools has just been released with updates to the nf-core template. This automated pull-request attempts to apply the relevant updates to this pipeline.

Please make sure to merge this pull-request as soon as possible, resolving any merge conflicts in the nf-core-template-merge-2.8 branch (or your own fork, if you prefer). Once complete, make a new minor release of your pipeline.

For instructions on how to merge this PR, please see https://nf-co.re/developers/sync.

For more information about this release of nf-core/tools, please see the v2.8 release page.

maxulysse
maxulysse reviewed May 12, 2023
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@maxulysse maxulysse left a comment

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Check if cellranger/count and cellranger/mkgtf need anything

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github-actions bot commented May 12, 2023 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit efb27a5

+| ✅ 158 tests passed       |+
#| ❔   1 tests were ignored |#
!| ❗   1 tests had warnings |!

❗ Test warnings:

  • system_exit - System.exit in WorkflowScrnaseq.groovy: System.exit(1) [line 18]

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 2.8
  • Run at 2023-05-12 16:08:17

@maxulysse maxulysse merged commit 23a8fff into dev May 22, 2023
@maxulysse maxulysse deleted the nf-core-template-merge-2.8 branch May 22, 2023 08:42
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@maxulysse maxulysse maxulysse left review comments

@adamrtalbot adamrtalbot adamrtalbot approved these changes

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@nf-core-bot @maxulysse @adamrtalbot