Merge pull request #349 from christopher-mohr/fix-conda-channels

change conda channels
nf-core · May 2, 2024 · 5eecb9a · 5eecb9a
2 parents d973585 + a6e64bd
commit 5eecb9a
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diff --git a/modules/local/datatable_merge.nf b/modules/local/datatable_merge.nf
@@ -1,7 +1,7 @@
 process TABLE_MERGE {
     label 'process_medium'
 
-    conda 'conda-base::r-data.table=1.12.2'
+    conda 'conda-forge::r-data.table=1.12.2'
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/r-data.table:1.12.2' :
         'biocontainers/r-data.table:1.12.2' }"

diff --git a/modules/local/mirtop_quant.nf b/modules/local/mirtop_quant.nf
@@ -1,7 +1,7 @@
 process MIRTOP_QUANT {
     label 'process_medium'
 
-    conda 'mirtop=0.4.25 bioconda::samtools=1.15.1 conda-base::r-base=4.1.1 conda-base::r-data.table=1.14.2'
+    conda 'mirtop=0.4.25 bioconda::samtools=1.15.1 conda-forge::r-base=4.1.1 conda-forge::r-data.table=1.14.2'
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/mulled-v2-0c13ef770dd7cc5c76c2ce23ba6669234cf03385:63be019f50581cc5dfe4fc0f73ae50f2d4d661f7-0' :
         'biocontainers/mulled-v2-0c13ef770dd7cc5c76c2ce23ba6669234cf03385:63be019f50581cc5dfe4fc0f73ae50f2d4d661f7-0' }"