create TEMPLATE branch

[lpantano]

hi,

This is the template I have in my branch done with nf-core 1.6. Should I just push the TEMPLATE branch to the smrnaseq pipeline since there is no branch right now?

https://github.com/lpantano/smrnaseq/tree/TEMPLATE

[apeltzer]

Yes! You could do that, to get this going! Thanks a bunch for working on this!

[lpantano]

ok! done: https://github.com/nf-core/smrnaseq/tree/TEMPLATE

[drpatelh]

Based on what it says here: https://nf-co.re/developers/sync
"Follow the prompts to fill in the pipeline name, description and author(s). Make sure that you take the exact text that you already have already used in your pipeline's nextflow.config file (manifest.name etc.), if these have already been written."

In nextflow.config, the manifest.author and manifest.description fields arent the same in the TEMPLATE and dev branches at the moment. Im assuming that will matter when the pipeline is auto-created by the template-bot?

Maybe the easiest thing to do is to create a PR to the TEMPLATE branch and make those fields the same?

From the last few PRs it seems like the pipeline is working @lpantano ? Im just thinking it may be worth doing another PR after that from dev to master to update all of the all code with the new template.

[drpatelh]

I believe you have done this now 👍