Issue with known adapters

[apeltzer]

Description of the bug

Error executing process > 'NFCORE_SMRNASEQ:SMRNASEQ:FASTQC_FASTP:FASTP (sample2)'

Caused by:
Essential container in task exited

Command executed:

[ ! -f sample2.fastq.gz ] && ln -sf sample_2.fastq.gz sample2.fastq.gz

fastp
--stdout
--in1 sample2.fastq.gz
--out1 sample2.fastp.fastq.gz
--thread 2
--json sample2.fastp.json
--html sample2.fastp.html

-l 17 --max_len1 40 --adapter_fasta /mnt/data/nf-core/nf-core-smrnaseq-2.1.0/workflow/assets/known_adapters.fa
2> sample2.fastp.log

cat <<-END_VERSIONS > versions.yml
"NFCORE_SMRNASEQ:SMRNASEQ:FASTQC_FASTP:FASTP":
fastp: $(fastp --version 2>&1 | sed -e "s/fastp //g")
END_VERSIONS

Command exit status:
255

Command output:
(empty)

Command used and terminal output

https://nfcore.slack.com/archives/CL66GAJBF/p1666824639185769

Relevant files

No response

System information

No response