MirTrace uses untrimmed fastq input

[apeltzer]

Description of the bug

The Fastqc reports are available for both before and after trimming (as intended).

Mirtrace however uses the untrimmed fastq file:

smrnaseq/workflows/smrnaseq.nf

Lines 137 to 146 in 5ce052d

	// SUBWORKFLOW: mirtrace QC
	//
	FASTQC_FASTP.out.adapterseq
	.join( ch_cat_fastq )
	.map { meta, adapterseq, fastq -> [adapterseq, meta.id, fastq] }
	.groupTuple()
	.set { ch_mitrace_inputs }
	MIRTRACE(ch_mitrace_inputs)
	ch_versions = ch_versions.mix(MIRTRACE.out.versions.ifEmpty(null))

This should be adjusted I think to match expectations here ...

Command used and terminal output

No response

Relevant files

No response

System information

No response