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fix docs for single end #361

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merged 3 commits into from
Jul 22, 2024
Merged

fix docs for single end #361

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5290627
fix docs for single end
lpantano Jul 11, 2024
e632969
update changelog
lpantano Jul 11, 2024
1bd9117
fix typo
lpantano Jul 11, 2024
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -5,6 +5,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0

## v2.3.2dev - 2024-XX-XX - X

- [[#332]](https://github.com/nf-core/smrnaseq/issues/332) by [[#361]](https://github.com/nf-core/smrnaseq/pull/361) - Fix documentation to use only single-end
- [[#349]](https://github.com/nf-core/smrnaseq/pull/349) - Fix [MIRTOP_QUANT conda issue](https://github.com/nf-core/smrnaseq/issues/347), change conda-base to conda-forge channel
- [[#350]](https://github.com/nf-core/smrnaseq/pull/350) - Fix [MIRTOP_QUANT conda issue](https://github.com/nf-core/smrnaseq/issues/347), set python version to 3.7 to fix pysam issue

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2 changes: 1 addition & 1 deletion docs/usage.md
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Expand Up @@ -93,7 +93,7 @@ CONTROL_REP1,AEG588A1_S1_L004_R1_001.fastq.gz

The pipeline will auto-detect whether a sample is single- or paired-end using the information provided in the samplesheet. The samplesheet can have as many columns as you desire. However, there is a strict requirement for the first 3 columns to match those defined in the table below.

A final samplesheet file consisting of both single- and paired-end data may look something like the one below. This is for 6 samples, where `TREATMENT_REP3` has been sequenced twice.
A final samplesheet file consisting of single-end data and may look something like the one below. This is for 6 samples, where `TREATMENT_REP3` has been sequenced twice.

```console
sample,fastq_1
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