Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add Illumina config to test profiles so that they match CI tests #375

Closed
Tracked by #371
atrigila opened this issue Aug 14, 2024 · 1 comment
Closed
Tracked by #371

Add Illumina config to test profiles so that they match CI tests #375

atrigila opened this issue Aug 14, 2024 · 1 comment
Assignees

Comments

@atrigila
Copy link
Contributor

atrigila commented Aug 14, 2024

The CI tests are currently executed with the profile configuration -profile test,illumina,docker, which differs from the typical -profile test,docker that most nf-core pipelines use.

If the users run the pipeline with -profile test,docker it would lead to the protocol custom to be used, instead of illumina. This inconsistency could lead to confusion, as the standard user environment does not accurately reflect the same results as the CI test environment.

@atrigila atrigila self-assigned this Aug 14, 2024
@atrigila atrigila moved this to In progress in smrnaseq Aug 14, 2024
@atrigila atrigila moved this from In progress to On Hold in smrnaseq Aug 15, 2024
@atrigila
Copy link
Contributor Author

Completed via #374

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
Status: Done
Development

No branches or pull requests

1 participant