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replace gtf with mirna_gtf #91

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merged 2 commits into from
Jun 10, 2021
+1 −6
Merged

replace gtf with mirna_gtf #91

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06413d0
replace gtf with mirna_gtf
KevinMenden Jun 10, 2021
179df50
remove gtf from schema
KevinMenden Jun 10, 2021
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2 changes: 1 addition & 1 deletion nextflow.config
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Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,7 @@ params {

// Reference genomes
genome = null
gtf = null
mirna_gtf = null
bt_indices = null
mirtrace_protocol = false
references_parsed = false
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5 changes: 0 additions & 5 deletions nextflow_schema.json
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Expand Up @@ -124,11 +124,6 @@
"hidden": true,
"help_text": "Do not load `igenomes.config` when running the pipeline. You may choose this option if you observe clashes between custom parameters and those supplied in `igenomes.config`."
},
"gtf": {
"type": "string",
"description": "Path to reference genome GTF file",
"fa_icon": "fas fa-address-book"
},
"bt_indices": {
"type": "array",
"description": "List of bowtie index files"
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