added patch command for subworkflows #6563

Job	Run time
Get test file matrix	3s
setup (3.8, ubuntu-latest)	1s
setup (3.11, ubuntu-latest)	1s
setup (3.8, ubuntu-20.04)	1s
Run test_utils.py with Python 3.8 on ubuntu-latest	53s
Run test_test_utils.py with Python 3.8 on ubuntu-latest	38s
Run test_sync.py with Python 3.8 on ubuntu-latest	37s
Run test_subworkflows.py with Python 3.8 on ubuntu-latest	45s
Run test_schema.py with Python 3.8 on ubuntu-latest	40s
Run test_refgenie.py with Python 3.8 on ubuntu-latest	43s
Run test_params_file.py with Python 3.8 on ubuntu-latest	41s
Run test_modules.py with Python 3.8 on ubuntu-latest	43s
Run test_list.py with Python 3.8 on ubuntu-latest	41s
Run test_lint_utils.py with Python 3.8 on ubuntu-latest	49s
Run test_lint.py with Python 3.8 on ubuntu-latest	46s
Run test_licenses.py with Python 3.8 on ubuntu-latest	53s
Run test_launch.py with Python 3.8 on ubuntu-latest	49s
Run test_download.py with Python 3.8 on ubuntu-latest	2m 37s
Run test_create_logo.py with Python 3.8 on ubuntu-latest	40s
Run test_create.py with Python 3.8 on ubuntu-latest	43s
Run test_components.py with Python 3.8 on ubuntu-latest	1m 33s
Run test_cli.py with Python 3.8 on ubuntu-latest	42s
Run test_bump_version.py with Python 3.8 on ubuntu-latest	43s
coverage	0s
	16m 42s

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