Merge pull request #2669 from mirpedrol/lint-patched-module

Modules: Fix linting of a pipeline with patched custom module
nf-core · Jan 18, 2024 · 7b259a8 · 7b259a8
2 parents c453edf + b58fe9e
commit 7b259a8
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -17,6 +17,8 @@
 
 ### Modules
 
+- Fix linting of a pipeline with patched custom module ([#2669](https://github.com/nf-core/tools/pull/2669))
+
 ### Subworkflows
 
 ### General

diff --git a/nf_core/modules/lint/module_changes.py b/nf_core/modules/lint/module_changes.py
@@ -31,7 +31,7 @@ def module_changes(module_lint_object, module):
         try:
             new_lines = ModulesDiffer.try_apply_patch(
                 module.component_name,
-                module_lint_object.modules_repo.repo_path,
+                module.org,
                 module.patch_path,
                 tempdir,
                 reverse=True,