Merge pull request #2377 from mirpedrol/multiqc-title

Add multiqc to modules.config
nf-core · Jul 17, 2023 · 7e69eed · 7e69eed
2 parents 0fe54b0 + 7fffb4b
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -4,6 +4,8 @@
 
 ### Template
 
+- Add module MULTIQC to modules.config ([#2377](https://github.com/nf-core/tools/pull/2377))
+
 ### Download
 
 - Improved container image resolution and prioritization of http downloads over Docker URIs ([#2364](https://github.com/nf-core/tools/pull/2364)).

diff --git a/nf_core/pipeline-template/conf/modules.config b/nf_core/pipeline-template/conf/modules.config
@@ -38,4 +38,13 @@ process {
         ]
     }
 
+    withName: 'MULTIQC' {
+        ext.args   = params.multiqc_title ? "--title \"$params.multiqc_title\"" : ''
+        publishDir = [
+            path: { "${params.outdir}/multiqc" },
+            mode: params.publish_dir_mode,
+            saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
+        ]
+    }
+
 }