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dev -> master for 2.12 #2698

Merged
merged 337 commits into from
Jan 29, 2024
Merged

dev -> master for 2.12 #2698

merged 337 commits into from
Jan 29, 2024

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mashehu
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@mashehu mashehu commented Jan 29, 2024

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mashehu and others added 30 commits January 5, 2024 12:05
@mashehu
don't pin subversion
2f4ad6d
@mashehu
Merge branch 'update-python-in-docker' of github.com:mashehu/tools in…
2aab15d 
…to update-python-in-docker
@mashehu
add more verbose fix-linting bot
f0d1543
@mashehu
introduce linting error
ce26f64
@mashehu
Revert "introduce linting error"
444aa84 
This reverts commit ce26f64.
@mashehu
Merge branch 'dev' into update-python-in-docker
0a4ff2f
@mashehu
use pdiff also on gitpod for nf-test
e54d268 
See nf-core/modules#4682
@nf-core-bot
[automated] Update CHANGELOG.md
0121539
@mashehu
avoid artifact upload name collisions
da9b55a
@mashehu
don't run CI on automated changelog changes
4574b10
@nf-core-bot
[automated] Update CHANGELOG.md
d23e491
@mashehu
fix one more collision
00a5fd1
@mashehu
Merge branch 'smaller-ci-fixes' of github.com:mashehu/tools into smal…
b1d7f3d 
…ler-ci-fixes
@mashehu
fix-copy-paste mistake
b41038e
@mashehu
fix nf-test caching
e6af209
@mashehu
Remove PR from changelog, because it is just some cleanup for #2550
a0c5061
@mashehu
don't clean up but do a manual check for nf-test
fddd38f
@mashehu
debug manual caching step
b3df098
@mashehu
more debugging
7eac66f
@mashehu
skip caching step correctly
3c41404
@mashehu
remove section indicator in Changelog entry
65178ee
@mashehu
only add codecov comment when coverage changes
f448a77
@mashehu
Merge pull request #2641 from mashehu/smaller-ci-fixes
e0dabc9 
Smaller ci fixes
@mashehu
Merge branch 'dev' into use-pdiff-in-gitpot
06c6e5f
@mashehu
put changelog comment in correct section
9b45d58
@mashehu
Merge branch 'dev' into update-python-in-docker
41d3575
@mashehu
Merge pull request #2640 from mashehu/use-pdiff-in-gitpot
19d2c4a 
use pdiff also on gitpod for nf-test
@mashehu
Merge pull request #2636 from mashehu/update-python-in-docker
97e9bd4 
update python image version in docker file
@mashehu
Merge branch 'dev' into make-fix-linting-more-verbose
e338b73
@mashehu
set pdiff is nf-test differ in docker image for gitpod
2f3e38f
mashehu and others added 18 commits January 26, 2024 16:37
@mashehu
Revert "Revert "template: add 👀👍🏻🎉😕 reactions to fix-linting bot acti…
08ff303 
…on""

This reverts commit 3fe5bf2.
@nf-core-bot
[automated] Update CHANGELOG.md
a45e605
@mashehu
fix linting
a45dc71
@mashehu
Update CHANGELOG.md
91f1d3c
@mashehu
Merge branch 'nicer-lint-bot-comment-again' of github.com:mashehu/too…
eef51f3 
…ls into nicer-lint-bot-comment-again
@mashehu
Merge pull request #2694 from mashehu/nicer-lint-bot-comment-again
b956079
@mirpedrol
Merge pull request #2689 from mirpedrol/subworkflow-lint
6805ee1 
Linting: fix bug when linting subworkflows from pipeline lint [skip changelog]
@mirpedrol
Merge branch 'dev' into renovate/astral-sh-ruff-pre-commit-0.x
0a43d19
@mirpedrol
Merge pull request #2674 from nf-core/renovate/astral-sh-ruff-pre-com…
b6eb508 
…mit-0.x

Update pre-commit hook astral-sh/ruff-pre-commit to v0.1.14
@mirpedrol
Merge branch 'dev' into renovate/peter-evans-create-or-update-comment…
027c519 
…-4.x
@mirpedrol
Merge pull request #2686 from mirpedrol/lint-ignore-files
93b96d0 
Linting: allow ignoring specific files when linting template_strings
@mirpedrol
Merge pull request #2683 from nf-core/renovate/peter-evans-create-or-…
e383527 
…update-comment-4.x

Update peter-evans/create-or-update-comment action to v4
@renovate
Update peter-evans/create-or-update-comment action to v4
40aac13
@nf-core-bot
[automated] Update CHANGELOG.md
e362e29
@mirpedrol
bump to 2.12 for release
95f449d
@mashehu
Merge pull request #2695 from nf-core/renovate/peter-evans-create-or-…
eb2531f 
…update-comment-4.x

Update peter-evans/create-or-update-comment action to v4
@mashehu
use correct prettier version in pre-commit template [no changelog]
df89d53
@mashehu
Merge pull request #2697 from mashehu/fix-pre-prettier
deedfa3 
use correct prettier version in pre-commit template [no changelog]
@codecov Codecov
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codecov bot commented Jan 29, 2024 •
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Codecov Report

All modified and coverable lines are covered by tests ✅

Comparison is base (4d01080) 71.52% compared to head (3588841) 73.46%.
Report is 1421 commits behind head on master.

❗ Current head 3588841 differs from pull request most recent head d177bd6. Consider uploading reports for the commit d177bd6 to get more accurate results

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mashehu and others added 2 commits January 29, 2024 13:33
@mashehu
Merge pull request #2699 from mashehu/add-create-logo-to-readme
9fe9d5a 
add documentation for create-logo command [no changelog]
@mirpedrol
Merge pull request #2696 from mirpedrol/bump-2.12
8a7502a 
bump to 2.12 for release [skip changelog]
@mashehu mashehu merged commit d1038fb into master Jan 29, 2024
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@mirpedrol mirpedrol mirpedrol approved these changes

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8 participants
@mashehu @mirpedrol @nf-core-bot @MatthiasZepper @edmundmiller @ewels @drpatelh @jfy133