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Add tests for assignment and referencing of params in main.nf #2841

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merged 5 commits into from
Mar 13, 2024
Merged

Add tests for assignment and referencing of params in main.nf #2841

merged 5 commits into from
Mar 13, 2024

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asp8200
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@asp8200 asp8200 commented Mar 12, 2024 •
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Trying to add some tests for the bug reported in #2833.

I locally tested that the test test_allow_params_reference_in_main_nf fails (as desired) with the former regexp which caused the bug #2833.

PR checklist

  • This comment contains a description of changes (with reason)
  • CHANGELOG.md is updated
  • If you've fixed a bug or added code that should be tested, add tests!
  • Documentation in docs is updated

@asp8200 asp8200 marked this pull request as ready for review March 12, 2024 10:56
mirpedrol
mirpedrol reviewed Mar 12, 2024
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Thanks for adding these tests!!
It is looking good :) The only thing to take into account is that we shouldn't modify the original pipeline template but only modify files within the tests.

nf_core/pipeline-template/main.nf Outdated Show resolved Hide resolved
tests/lint/nextflow_config.py Outdated Show resolved Hide resolved
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codecov bot commented Mar 12, 2024 •
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Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 74.78%. Comparing base (9f78a5e) to head (b079de9).

Additional details and impacted files

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@asp8200 asp8200 requested a review from mirpedrol March 12, 2024 15:13
mirpedrol
mirpedrol approved these changes Mar 13, 2024
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LGTM, thank you :)

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asp8200 commented Mar 13, 2024

LGTM, thank you :)

Thanks for the help on this. Happy to contribute 🙂

@asp8200 asp8200 merged commit 47f18ea into nf-core:dev Mar 13, 2024
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@asp8200 @mirpedrol @nf-core-bot @mashehu