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Add cleanup step to download pipeline workflow #2849

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merged 3 commits into from
Mar 15, 2024
Merged

Add cleanup step to download pipeline workflow #2849

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8f3ddb6
add cleanup step to download pipeline workflow
ramprasadn Mar 15, 2024
6d65c60
Merge remote-tracking branch 'upstream/dev' into add-cleanup-to-download
ramprasadn Mar 15, 2024
514b65d
update changelog
ramprasadn Mar 15, 2024
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -8,6 +8,7 @@
- Update templates to use nf-core/setup-nextflow v2
- Link to troubleshooting docs when pipeline fails ([#2845](https://github.com/nf-core/tools/pull/2845))
- Add fallback to `download_pipeline.yml` in case the pipeline does not support stub runs ([#2846](https://github.com/nf-core/tools/pull/2846))
- Add a cleanup action to `download_pipeline.yml` to fix failures caused by inadequate storage space on the runner ([#2849](https://github.com/nf-core/tools/pull/2849))

### Linting

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3 changes: 3 additions & 0 deletions nf_core/pipeline-template/.github/workflows/download_pipeline.yml
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Expand Up @@ -32,6 +32,9 @@ jobs:
- name: Install Nextflow
uses: nf-core/setup-nextflow@v2

- name: Disk space cleanup
uses: jlumbroso/free-disk-space@54081f138730dfa15788a46383842cd2f914a1be # v1.3.1

- uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c # v5
with:
python-version: "3.11"
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