update ontologies with structural follows relationships, fix some n…

…umbering errors

src/ARCTokenization/structural_ontologies/assay_metadata_structural_ontology.obo

@@ -31,6 +31,8 @@ def: ""
 synonym: "Measurement Type" EXACT []
 relationship: part_of ASSMSO:00000002 ! ASSAY
 relationship: part_of ASSMSO:00000003 ! ASSAY METADATA
+relationship: follows ASSMSO:00000002 ! ASSAY
+relationship: follows ASSMSO:00000003 ! ASSAY METADATA
 
 [Term]
 id: ASSMSO:00000005
@@ -40,6 +42,8 @@ synonym: "Assay Measurement Type" EXACT []
 is_obsolete: true
 relationship: part_of ASSMSO:00000002 ! ASSAY
 relationship: part_of ASSMSO:00000003 ! ASSAY METADATA
+relationship: follows ASSMSO:00000002 ! ASSAY
+relationship: follows ASSMSO:00000003 ! ASSAY METADATA
 
 [Term]
 id: ASSMSO:00000006
@@ -48,6 +52,8 @@ def: ""
 synonym: "Measurement Type Term Accession Number" EXACT []
 relationship: part_of ASSMSO:00000002 ! ASSAY
 relationship: part_of ASSMSO:00000003 ! ASSAY METADATA
+relationship: follows ASSMSO:00000004 ! Assay Measurement Type
+relationship: follows ASSMSO:00000005 ! Measurement Type
 
 [Term]
 id: ASSMSO:00000007
@@ -57,6 +63,8 @@ synonym: "" EXACT []
 is_obsolete: true
 relationship: part_of ASSMSO:00000002 ! ASSAY
 relationship: part_of ASSMSO:00000003 ! ASSAY METADATA
+relationship: follows ASSMSO:00000004 ! Assay Measurement Type
+relationship: follows ASSMSO:00000005 ! Measurement Type
 
 [Term]
 id: ASSMSO:00000008
@@ -65,6 +73,8 @@ def: ""
 synonym: "Measurement Type Term Source REF" EXACT []
 relationship: part_of ASSMSO:00000002 ! ASSAY
 relationship: part_of ASSMSO:00000003 ! ASSAY METADATA
+relationship: follows ASSMSO:00000006 ! Measurement Type Term Accession Number
+relationship: follows ASSMSO:00000007 ! Assay Measurement Type Term Accession Number
 
 [Term]
 id: ASSMSO:00000009
@@ -74,6 +84,8 @@ synonym: "Assay Measurement Type Term Source REF" EXACT []
 is_obsolete: true
 relationship: part_of ASSMSO:00000002 ! ASSAY
 relationship: part_of ASSMSO:00000003 ! ASSAY METADATA
+relationship: follows ASSMSO:00000006 ! Measurement Type Term Accession Number
+relationship: follows ASSMSO:00000007 ! Assay Measurement Type Term Accession Number
 
 [Term]
 id: ASSMSO:00000010
@@ -83,15 +95,19 @@ synonym: "Assay Technology Type" EXACT []
 is_obsolete: true
 relationship: part_of ASSMSO:00000002 ! ASSAY
 relationship: part_of ASSMSO:00000003 ! ASSAY METADATA
-
+relationship: follows ASSMSO:00000008 ! Measurement Type Term Source REF
+relationship: follows ASSMSO:00000009 ! Assay Measurement Type Term Source REF
+
 [Term]
 id: ASSMSO:00000011
 name: Assay Technology Type
 def: ""
 synonym: "Technology Type" EXACT []
 relationship: part_of ASSMSO:00000002 ! ASSAY
 relationship: part_of ASSMSO:00000003 ! ASSAY METADATA
-
+relationship: follows ASSMSO:00000008 ! Measurement Type Term Source REF
+relationship: follows ASSMSO:00000009 ! Assay Measurement Type Term Source REF
+
 [Term]
 id: ASSMSO:00000012
 name: Technology Type Term Accession Number
@@ -100,7 +116,9 @@ synonym: "Assay Technology Type Term Accession Number" EXACT []
 is_obsolete: true
 relationship: part_of ASSMSO:00000002 ! ASSAY
 relationship: part_of ASSMSO:00000003 ! ASSAY METADATA
-
+relationship: follows ASSMSO:00000010 ! Technology Type
+relationship: follows ASSMSO:00000011 ! Assay Technology Type
+
 [Term]
 id: ASSMSO:00000013
 name: Assay Technology Type Term Accession Number
@@ -109,7 +127,9 @@ synonym: "Technology Type Term Accession Number" EXACT []
 is_obsolete: true
 relationship: part_of ASSMSO:00000002 ! ASSAY
 relationship: part_of ASSMSO:00000003 ! ASSAY METADATA
-
+relationship: follows ASSMSO:00000010 ! Technology Type
+relationship: follows ASSMSO:00000011 ! Assay Technology Type
+
 [Term]
 id: ASSMSO:00000014
 name: Technology Type Term Source REF
@@ -118,15 +138,19 @@ synonym: "Assay Technology Type Term Source REF" EXACT []
 is_obsolete: true
 relationship: part_of ASSMSO:00000002 ! ASSAY
 relationship: part_of ASSMSO:00000003 ! ASSAY METADATA
-
+relationship: follows ASSMSO:00000012 ! Technology Type Term Accession Number
+relationship: follows ASSMSO:00000013 ! Assay Technology Type Term Accession Number
+
 [Term]
 id: ASSMSO:00000015
 name: Assay Technology Type Term Source REF
 def: ""
 synonym: "Technology Type Term Source REF" EXACT []
 relationship: part_of ASSMSO:00000002 ! ASSAY
 relationship: part_of ASSMSO:00000003 ! ASSAY METADATA
-
+relationship: follows ASSMSO:00000012 ! Technology Type Term Accession Number
+relationship: follows ASSMSO:00000013 ! Assay Technology Type Term Accession Number
+
 [Term]
 id: ASSMSO:00000016
 name: Technology Platform
@@ -135,15 +159,19 @@ synonym: "Assay Technology Platform" EXACT []
 is_obsolete: true
 relationship: part_of ASSMSO:00000002 ! ASSAY
 relationship: part_of ASSMSO:00000003 ! ASSAY METADATA
-
+relationship: follows ASSMSO:00000014 ! Technology Type Term Source REF
+relationship: follows ASSMSO:00000015 ! Assay Technology Type Term Source REF
+
 [Term]
 id: ASSMSO:00000017
 name: Assay Technology Platform
 def: ""
 synonym: "Technology Platform" EXACT []
 relationship: part_of ASSMSO:00000002 ! ASSAY
 relationship: part_of ASSMSO:00000003 ! ASSAY METADATA
-
+relationship: follows ASSMSO:00000014 ! Technology Type Term Source REF
+relationship: follows ASSMSO:00000015 ! Assay Technology Type Term Source REF
+
 [Term]
 id: ASSMSO:00000018
 name: File Name
@@ -152,27 +180,34 @@ synonym: "Assay File Name" EXACT []
 is_obsolete: true
 relationship: part_of ASSMSO:00000002 ! ASSAY
 relationship: part_of ASSMSO:00000003 ! ASSAY METADATA
-
+relationship: follows ASSMSO:00000016 ! Technology Platform
+relationship: follows ASSMSO:00000017 ! Assay Technology Platform
+
 [Term]
 id: ASSMSO:00000019
 name: Assay File Name
 def: ""
 synonym: "File Name" EXACT []
 relationship: part_of ASSMSO:00000002 ! ASSAY
 relationship: part_of ASSMSO:00000003 ! ASSAY METADATA
+relationship: follows ASSMSO:00000016 ! Technology Platform
+relationship: follows ASSMSO:00000017 ! Assay Technology Platform
 
 [Term]
 id: ASSMSO:00000020
 name: ASSAY PERFORMERS
 def: ""
 relationship: part_of ASSMSO:00000001 ! ASSAY Metadata
+relationship: follows ASSMSO:00000018 ! File Name
+relationship: follows ASSMSO:00000019 ! Assay File Name
 
 [Term]
 id: ASSMSO:00000021
 name: Assay Performer Last Name
 def: ""
 synonym: "Last Name" EXACT []
 relationship: part_of ASSMSO:00000020 ! ASSAY PERFORMERS
+relationship: follows ASSMSO:00000020 ! ASSAY PERFORMERS
 
 [Term]
 id: ASSMSO:00000022
@@ -181,13 +216,16 @@ def: ""
 synonym: "Assay Performer Last Name" EXACT []
 is_obsolete: true
 relationship: part_of ASSMSO:00000020 ! ASSAY PERFORMERS
+relationship: follows ASSMSO:00000020 ! ASSAY PERFORMERS
 
 [Term]
 id: ASSMSO:00000023
 name: Assay Performer First Name
 def: ""
 synonym: "First Name" EXACT []
 relationship: part_of ASSMSO:00000020 ! ASSAY PERFORMERS
+relationship: follows ASSMSO:00000021 ! Assay Performer Last Name
+relationship: follows ASSMSO:00000022 ! Last Name
 
 [Term]
 id: ASSMSO:00000024
@@ -196,139 +234,176 @@ def: ""
 synonym: "Assay Performer First Name" EXACT []
 is_obsolete: true
 relationship: part_of ASSMSO:00000020 ! ASSAY PERFORMERS
+relationship: follows ASSMSO:00000021 ! Assay Performer Last Name
+relationship: follows ASSMSO:00000022 ! Last Name
 
 [Term]
 id: ASSMSO:00000025
 name: Assay Performer Mid Initials
 def: ""
 synonym: "Mid Initials" EXACT []
 relationship: part_of ASSMSO:00000020 ! ASSAY PERFORMERS
-
+relationship: follows ASSMSO:00000023 ! Assay Performer First Name
+relationship: follows ASSMSO:00000024 ! First Name
+
 [Term]
 id: ASSMSO:00000026
 name: Mid Initials
 def: ""
 synonym: "Assay Performer Mid Initials" EXACT []
 is_obsolete: true
 relationship: part_of ASSMSO:00000020 ! ASSAY PERFORMERS
-
+relationship: follows ASSMSO:00000023 ! Assay Performer First Name
+relationship: follows ASSMSO:00000024 ! First Name
+
 [Term]
 id: ASSMSO:00000027
 name: Assay Performer Email
 def: ""
 synonym: "Email" EXACT []
 relationship: part_of ASSMSO:00000020 ! ASSAY PERFORMERS
-
+relationship: follows ASSMSO:00000025 ! Assay Performer Mid Initials
+relationship: follows ASSMSO:00000026 ! Mid Initials
+
 [Term]
 id: ASSMSO:00000028
 name: Email
 def: ""
 synonym: "Assay Performer Email" EXACT []
 is_obsolete: true
 relationship: part_of ASSMSO:00000020 ! ASSAY PERFORMERS
+relationship: follows ASSMSO:00000025 ! Assay Performer Mid Initials
+relationship: follows ASSMSO:00000026 ! Mid Initials
 
 [Term]
 id: ASSMSO:00000029
 name: Assay Performer Phone
 def: ""
 synonym: "Phone" EXACT []
 relationship: part_of ASSMSO:00000020 ! ASSAY PERFORMERS
-
+relationship: follows ASSMSO:00000027 ! Assay Performer Email
+relationship: follows ASSMSO:00000028 ! Email
+
 [Term]
 id: ASSMSO:00000030
 name: Phone
 def: ""
 synonym: "Assay Performer Phone" EXACT []
 is_obsolete: true
 relationship: part_of ASSMSO:00000020 ! ASSAY PERFORMERS
+relationship: follows ASSMSO:00000027 ! Assay Performer Email
+relationship: follows ASSMSO:00000028 ! Email
 
 [Term]
 id: ASSMSO:00000031
 name: Assay Performer Fax
 def: ""
 synonym: "Fax" EXACT []
 relationship: part_of ASSMSO:00000020 ! ASSAY PERFORMERS
-
+relationship: follows ASSMSO:00000029 ! Assay Performer Phone
+relationship: follows ASSMSO:00000030 ! Phone
+
 [Term]
 id: ASSMSO:00000032
 name: Fax
 def: ""
 synonym: "Assay Performer Fax" EXACT []
 is_obsolete: true
 relationship: part_of ASSMSO:00000020 ! ASSAY PERFORMERS
+relationship: follows ASSMSO:00000029 ! Assay Performer Phone
+relationship: follows ASSMSO:00000030 ! Phone
 
 [Term]
 id: ASSMSO:00000033
 name: Assay Performer Address
 def: ""
 synonym: "Address" EXACT []
 relationship: part_of ASSMSO:00000020 ! ASSAY PERFORMERS
-
+relationship: follows ASSMSO:00000031 ! Assay Performer Fax
+relationship: follows ASSMSO:00000032 ! Fax
+
 [Term]
 id: ASSMSO:00000034
 name: Address
 def: ""
 synonym: "Assay Performer Address" EXACT []
 is_obsolete: true
 relationship: part_of ASSMSO:00000020 ! ASSAY PERFORMERS
+relationship: follows ASSMSO:00000031 ! Assay Performer Fax
+relationship: follows ASSMSO:00000032 ! Fax
 
 [Term]
 id: ASSMSO:00000035
 name: Assay Performer Affiliation
 def: ""
 synonym: "Affiliation" EXACT []
 relationship: part_of ASSMSO:00000020 ! ASSAY PERFORMERS
-
+relationship: follows ASSMSO:00000033 ! Assay Performer Address
+relationship: follows ASSMSO:00000034 ! Address
+
 [Term]
 id: ASSMSO:00000036
 name: Affiliation
 def: ""
 synonym: "Assay Performer Affiliation" EXACT []
 is_obsolete: true
 relationship: part_of ASSMSO:00000020 ! ASSAY PERFORMERS
+relationship: follows ASSMSO:00000033 ! Assay Performer Address
+relationship: follows ASSMSO:00000034 ! Address
 
 [Term]
 id: ASSMSO:00000037
 name: Assay Performer Roles
 def: ""
 synonym: "Roles" EXACT []
 relationship: part_of ASSMSO:00000020 ! ASSAY PERFORMERS
-
+relationship: follows ASSMSO:00000035 ! Assay Performer Affiliation
+relationship: follows ASSMSO:00000036 ! Affiliation
+
 [Term]
 id: ASSMSO:00000038
 name: Roles
 def: ""
 synonym: "Assay Performer Roles" EXACT []
 is_obsolete: true
 relationship: part_of ASSMSO:00000020 ! ASSAY PERFORMERS
+relationship: follows ASSMSO:00000035 ! Assay Performer Affiliation
+relationship: follows ASSMSO:00000036 ! Affiliation
 
 [Term]
 id: ASSMSO:00000039
 name: Assay Performer Roles Term Accession Number
 def: ""
 synonym: "Roles Term Accession Number" EXACT []
 relationship: part_of ASSMSO:00000020 ! ASSAY PERFORMERS
-
+relationship: follows ASSMSO:00000037 ! Assay Performer Roles
+relationship: follows ASSMSO:00000038 ! Roles
+
 [Term]
 id: ASSMSO:00000040
 name: Roles Term Accession Number
 def: ""
 synonym: "Assay Performer Roles Term Accession Number" EXACT []
 is_obsolete: true
 relationship: part_of ASSMSO:00000020 ! ASSAY PERFORMERS
+relationship: follows ASSMSO:00000037 ! Assay Performer Roles
+relationship: follows ASSMSO:00000038 ! Roles
 
 [Term]
 id: ASSMSO:00000041
 name: Assay Performer Roles Term Source REF
 def: ""
 synonym: "Roles Term Source REF" EXACT []
 relationship: part_of ASSMSO:00000020 ! ASSAY PERFORMERS
-
+relationship: follows ASSMSO:00000039 ! Assay Performer Roles Term Accession Number
+relationship: follows ASSMSO:00000040 ! Roles Term Accession Number
+
 [Term]
 id: ASSMSO:00000042
 name: Roles Term Source REF
 def: ""
 synonym: "Assay Performer Roles Term Source REF" EXACT []
 is_obsolete: true
 relationship: part_of ASSMSO:00000020 ! ASSAY PERFORMERS
-
+relationship: follows ASSMSO:00000039 ! Assay Performer Roles Term Accession Number
+relationship: follows ASSMSO:00000040 ! Roles Term Accession Number