changes from CRAN checks and new Rhub process

DESCRIPTION

@@ -31,7 +31,6 @@ Suggests:
     rmarkdown,
     COUNT,
     tidyr,
-    covr,
-    Cairo
+    covr
 VignetteBuilder: knitr
 Config/testthat/edition: 3

R/funnel_plot.R

@@ -13,14 +13,15 @@
 #' @param limit Plot limits, accepted values are: 95 or 99, corresponding to 95\% or 99.8\% quantiles of the distribution. Default=99,and applies to OD limits if both OD and Poisson are used.
 #' @param label Whether to label outliers, highlighted groups, both or none. Default is "outlier", by accepted values are:\cr
 #' \itemize{
-#' \item{\code{"outlier"}}{ - Labels upper and lower outliers, determined in relation to the `limit` argument.}
-#' \item{\code{"outlier_lower"}}{ - Labels just and lower outliers, determined in relation to the `limit` argument.}
-#' \item{\code{"outlier_upper"}}{ - Labels just upper, determined in relation to the `limit` argument.}
-#' \item{\code{"highlight"}}{ - Labels the value(s) given in the `highlight`argument.}
-#' \item{\code{"both"}}{ - Labels both the highlighted values(s), upper and lower outliers, determined in relation to the `limit` argument.}
-#' \item{\code{"both_lower"}}{ - Labels both the highlighted values(s) and lower outliers, determined in relation to the `limit` argument.}
-#' \item{\code{"both_upper"}}{ - Labels both the highlighted values(s) and upper outliers, determined in relation to the `limit` argument.}
-#' \item{\code{NA}}{ - No labels applied}}
+#' \item{\code{"outlier"} - Labels upper and lower outliers, determined in relation to the `limit` argument.}
+#' \item{\code{"outlier_lower"} - Labels just and lower outliers, determined in relation to the `limit` argument.}
+#' \item{\code{"outlier_upper"} - Labels just upper, determined in relation to the `limit` argument.}
+#' \item{\code{"highlight"} - Labels the value(s) given in the `highlight`argument.}
+#' \item{\code{"both"} - Labels both the highlighted values(s), upper and lower outliers, determined in relation to the `limit` argument.}
+#' \item{\code{"both_lower"} - Labels both the highlighted values(s) and lower outliers, determined in relation to the `limit` argument.}
+#' \item{\code{"both_upper"} - Labels both the highlighted values(s) and upper outliers, determined in relation to the `limit` argument.}
+#' \item{\code{NA} - No labels applied}
+#' }
 #' @param highlight Single or vector of points to highlight, with a different colour and point style. Should correspond to values specified to `group`. Default is NA, for no highlighting.
 #' @param label_outliers Deprecated.  Please use the `label` argument instead.
 #' @param Poisson_limits Deprecated.  Please use the `draw_unadjusted` argument instead.

README.Rmd

@@ -11,7 +11,6 @@ knitr::opts_chunk$set(
   comment = "#>",
   fig.path = "man/figures/README-",
   out.width = "100%",
-  dev.args = list(png = list(type = "cairo")),
   fig.retina=3
 )
 

cran-comments.md

@@ -11,7 +11,7 @@ Resolved 2 CRAN checks NOTES: lost braces in a file due to line breaks, and rena
 ## Test environments
 * local windows 10, R 4.3.2
 
-* R-devel, on Win-builder
+* R-devel and release, on Win-builder
 
 * GitHub actions:
   * Mac OS x 12.7.4 21H123, R 4.3.3
@@ -20,8 +20,10 @@ Resolved 2 CRAN checks NOTES: lost braces in a file due to line breaks, and rena
   * Ubuntu 20.04.6 LTS, R-devel 2023-05-31
   * Ubuntu 20.04.6 LTS, R 4.3.3
 
-* r-hub:
-  * Ubuntu Linux 20.04.1 LTS, R-release, GCC
+* r-hub v2 via GitHub actions:
+  * Ubuntu Linux 22.04.4 LTS, R-release, GCC
+  * Ubuntu-clang Linux 20.04.4 LTS, R-devel - failed due to errors with Cairo device on platform
+  * Mac OS-arm x 14.4.1 23E224, R 4.3.3 - failed due to cache issues on platform, and Cairo device.
   * Fedora Linux, R-devel, clang, gfortran
   * Windows Server 2022, R-devel, 64 bit