get_spm_globals added #15
Conversation
There was a problem hiding this comment.
This is great! I just left one comment on the code, anticipating potential uses.
Although the title of the PR and comment are informative, a better PR description would be great for other developers to understand what was done and why. Similarly, for each commit message (there's only one here, so not much to confuse anyone, but sometimes PRs require lots of commits).
| for vol in range(data.shape[-1]): | ||
| glob = spm_global(data[..., vol]) | ||
| spm_vals.append(glob) | ||
| return spm_vals # Return the result. |
There was a problem hiding this comment.
What is the type of spm_vals?
If you read the docstring (line 54 above) it says array, which is very unclear but seems to refer to a numpy.array, however, you return a basic list here. Consider converting it to array before returning or else downstream methods could fail. For instance, with the current implementation you would not be able to do:
average_spm = get_spm_globals(nifti_file).mean()
get_spm_globalstospm_funcs.py.