FIX: specify echo reference for ME

Co-authored-by: Oscar Esteban <code@oscaresteban.es>
nipreps · Oct 29, 2021 · 24493a8 · 24493a8
1 parent 1441abe
commit 24493a8
Showing 1 changed file with 3 additions and 1 deletion.
diff --git a/fprodents/workflows/base.py b/fprodents/workflows/base.py
@@ -303,7 +303,9 @@ def init_single_subject_wf(subject_id):
             auto_bold_nss=True,
             omp_nthreads=config.nipype.omp_nthreads
         )
-        bold_ref_wf.inputs.inputnode.in_files = bold_file
+        bold_ref_wf.inputs.inputnode.in_files = (
+            bold_file if not multiecho else bold_file[0]
+        )
 
         # brain extraction on reference file
         brain_extraction_wf = init_rodent_brain_extraction_wf(ants_affine_init=False)