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chore(deps): Update environment to use pybids 0.17.0
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effigies committed Jul 29, 2024
1 parent ea65196 commit ab72393
Showing 1 changed file with 52 additions and 13 deletions.
65 changes: 52 additions & 13 deletions requirements.txt
Original file line number Diff line number Diff line change
@@ -1,12 +1,14 @@
# This file was autogenerated by uv via the following command:
# uv pip compile --extra=container --strip-extras pyproject.toml -o requirements.txt -P 3.10
# uv pip compile --extra=container --strip-extras pyproject.toml -o requirements.txt -p 3.11
acres==0.1.0
# via fmriprep (pyproject.toml)
annexremote==1.6.5
# via
# datalad
# datalad-next
# datalad-osf
apscheduler==3.10.4
# via fmriprep (pyproject.toml)
arrow==1.3.0
# via codecarbon
astor==0.8.1
Expand All @@ -15,13 +17,15 @@ attrs==23.2.0
# via
# niworkflows
# sdcflows
backports-tarfile==1.2.0
# via jaraco-context
bids-validator==1.14.6
# via pybids
bokeh==3.4.1
# via tedana
boto3==1.34.144
boto3==1.34.149
# via datalad
botocore==1.34.144
botocore==1.34.149
# via
# boto3
# s3transfer
Expand All @@ -45,21 +49,24 @@ click==8.1.7
# nipype
# pybids
codecarbon==2.5.0
# via fmriprep (pyproject.toml)
contourpy==1.2.1
# via
# bokeh
# matplotlib
cryptography==42.0.8
cryptography==43.0.0
# via secretstorage
cycler==0.12.1
# via matplotlib
datalad==1.1.1
datalad==1.1.2
# via
# fmriprep (pyproject.toml)
# datalad-next
# datalad-osf
datalad-next==1.5.0
# via datalad-osf
datalad-osf==0.3.0
# via fmriprep (pyproject.toml)
distro==1.9.0
# via datalad
docopt==0.6.2
Expand All @@ -74,6 +81,8 @@ fonttools==4.53.1
# via matplotlib
formulaic==0.5.2
# via pybids
fsspec==2024.6.1
# via universal-pathlib
greenlet==3.0.3
# via sqlalchemy
h5py==3.11.0
Expand All @@ -86,6 +95,10 @@ idna==3.7
# via requests
imageio==2.34.2
# via scikit-image
importlib-metadata==8.2.0
# via keyring
importlib-resources==6.4.0
# via nireports
indexed-gzip==1.8.7
# via smriprep
interface-meta==1.3.0
Expand Down Expand Up @@ -134,6 +147,7 @@ lockfile==0.12.2
# via smriprep
looseversion==1.3.0
# via
# fmriprep (pyproject.toml)
# datalad
# nipype
# niworkflows
Expand All @@ -156,7 +170,9 @@ matplotlib==3.9.1
# smriprep
# tedana
migas==0.4.0
# via sdcflows
# via
# fmriprep (pyproject.toml)
# sdcflows
more-itertools==10.3.0
# via
# datalad-next
Expand All @@ -171,6 +187,7 @@ networkx==3.3
# scikit-image
nibabel==5.2.1
# via
# fmriprep (pyproject.toml)
# mapca
# nilearn
# nipype
Expand All @@ -189,24 +206,29 @@ nilearn==0.10.4
# tedana
nipype==1.8.6
# via
# fmriprep (pyproject.toml)
# nireports
# niworkflows
# sdcflows
# smriprep
nireports==23.2.1
nitime==0.11
# via fmriprep (pyproject.toml)
nitransforms==23.0.1
# via
# fmriprep (pyproject.toml)
# niworkflows
# sdcflows
niworkflows==1.10.2
# via
# fmriprep (pyproject.toml)
# sdcflows
# smriprep
num2words==0.5.13
# via pybids
numpy==1.26.4
# via
# fmriprep (pyproject.toml)
# bokeh
# contourpy
# formulaic
Expand Down Expand Up @@ -236,6 +258,7 @@ osfclient==0.0.5
# via datalad-osf
packaging==24.1
# via
# fmriprep (pyproject.toml)
# bokeh
# datalad
# etelemetry
Expand All @@ -249,6 +272,7 @@ packaging==24.1
# smriprep
pandas==2.2.2
# via
# fmriprep (pyproject.toml)
# bokeh
# codecarbon
# formulaic
Expand All @@ -273,11 +297,14 @@ prometheus-client==0.20.0
prov==2.0.1
# via nipype
psutil==6.0.0
# via codecarbon
# via
# fmriprep (pyproject.toml)
# codecarbon
py-cpuinfo==9.0.0
# via codecarbon
pybids==0.16.5
pybids==0.17.0
# via
# fmriprep (pyproject.toml)
# nireports
# niworkflows
# sdcflows
Expand Down Expand Up @@ -319,14 +346,15 @@ pyyaml==6.0.1
# niworkflows
# pybtex
# smriprep
rapidfuzz==3.9.4
rapidfuzz==3.9.5
# via codecarbon
rdflib==6.3.2
# via
# nipype
# prov
requests==2.32.3
# via
# fmriprep (pyproject.toml)
# codecarbon
# datalad
# etelemetry
Expand Down Expand Up @@ -369,7 +397,8 @@ seaborn==0.13.2
# niworkflows
secretstorage==3.3.3
# via keyring
sentry-sdk==2.10.0
sentry-sdk==2.11.0
# via fmriprep (pyproject.toml)
simplejson==3.19.2
# via nipype
six==1.16.0
Expand All @@ -387,8 +416,10 @@ svgutils==0.3.4
# nireports
# niworkflows
tedana==24.0.1
# via fmriprep (pyproject.toml)
templateflow==24.2.0
# via
# fmriprep (pyproject.toml)
# nireports
# niworkflows
# sdcflows
Expand All @@ -397,10 +428,12 @@ threadpoolctl==3.5.0
# via
# scikit-learn
# tedana
tifffile==2024.7.2
tifffile==2024.7.24
# via scikit-image
toml==0.10.2
# via sdcflows
# via
# fmriprep (pyproject.toml)
# sdcflows
tornado==6.4.1
# via bokeh
tqdm==4.66.4
Expand All @@ -415,7 +448,9 @@ traits==6.3.2
# niworkflows
# sdcflows
transforms3d==0.4.2
# via niworkflows
# via
# fmriprep (pyproject.toml)
# niworkflows
types-python-dateutil==2.9.0.20240316
# via arrow
typing-extensions==4.12.2
Expand All @@ -426,6 +461,8 @@ tzdata==2024.1
# via pandas
tzlocal==5.2
# via apscheduler
universal-pathlib==0.2.2
# via pybids
urllib3==2.2.2
# via
# botocore
Expand All @@ -435,3 +472,5 @@ wrapt==1.16.0
# via formulaic
xyzservices==2024.6.0
# via bokeh
zipp==3.19.2
# via importlib-metadata

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