Allow --derivatives to be named
#3260
Labels
Comments
|
Yes. I believe I actually implemented this in the wrapper but not the actual cli. I agree this is where we should go. |
effigies
added a commit
that referenced
this issue
Mar 29, 2024
Closes #3260. ## Changes proposed in this pull request - Copy over `ToDict` action from fmriprep-docker over to the main CLI parser. - Modify the Config to handle named derivative paths. - E.g., `--derivatives anat=/path/to/smriprep` --> `DatasetLinks = {'anat': '/path/to/smriprep'}` - Infer derivative name from the folder name of the derivative path if it isn't labeled. - E.g., `--derivatives /path/to/smriprep` --> `DatasetLinks = {'smriprep': '/path/to/smriprep'}` --------- Co-authored-by: Chris Markiewicz <effigies@gmail.com>
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
What would you like to see added in fMRIPrep?
In #3252, we started creating DatasetLinks for derivative datasets passed through the
--derivativesparameter. However, because there's no easy way to infer what each derivative dataset actually is, we're labeling them asderiv-<index>in the DatasetLinks. I think the DatasetLinks and BIDS URIs throughout the derivatives would be more interpretable if users could label their input derivative datsets.Do you have any interest in helping implement the feature?
Yes
Additional information / screenshots
I was thinking something like:
The text was updated successfully, but these errors were encountered: