ENH: Output TaskName and timing metadata for all resampled BOLD series

[effigies]

Changes proposed in this pull request

• Add a function to determine output timing parameters from input metadata.
• Pass timing parameters to all BOLD series data sinks to ensure consistent metadata
• Also adds TaskName to relevant data sinks

Closes #1549.
Fixes #2193.
Fixes #2294.

Depends on nipreps/niworkflows#578.

Documentation that should be reviewed

[pep8speaks]

Hello @effigies! Thanks for updating this PR. We checked the lines you've touched for PEP 8 issues, and found:

There are currently no PEP 8 issues detected in this Pull Request. Cheers! 🍻

Comment last updated at 2020-11-05 21:31:13 UTC

[effigies]

Need to rerun to check expected outputs, but the JSON files can be inspected in artifacts: https://app.circleci.com/pipelines/github/nipreps/fmriprep/51/workflows/a89942cc-7cd9-4b18-acbe-b83c777304b5/jobs/324/artifacts

fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-fsLR_den-91k_bold.json:

{
  "RepetitionTime": 2.0,
  "TaskName": "mixed-gambles task"
}

fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-fsLR_den-91k_bold.dtseries.json:

{
  "grayordinates": "91k",
  "space": "HCP grayordinates",
  "surface": "fsLR",
  "surface_density": "32k",
  "volume": "MNI152NLin6Asym"
}

[effigies]

Kind of wild RTD build:

Collecting psutil>=5.4
  Downloading psutil-5.7.3.tar.gz (465 kB)
Collecting pyyaml
  Downloading PyYAML-5.3.1.tar.gz (269 kB)
Collecting sdcflows~=1.3.2
  Downloading sdcflows-1.3.3-py3-none-any.whl (5.6 MB)
Collecting niworkflows@ git+https://github.com/effigies/niworkflows.git@fix/legacy_dtseries_json
  Cloning https://github.com/effigies/niworkflows.git (to revision fix/legacy_dtseries_json) to /tmp/pip-install-7hlb83i3/niworkflows_7dc7f1f41a2b431c830c641d336b357d
  Installing build dependencies: started
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
    Preparing wheel metadata: started
    Preparing wheel metadata: finished with status 'done'
Collecting sdcflows~=1.3.2
  Downloading sdcflows-1.3.2-py3-none-any.whl (5.6 MB)
Collecting pyyaml
  Downloading PyYAML-5.3.tar.gz (268 kB)
Collecting pyyaml
  Downloading PyYAML-5.2.tar.gz (265 kB)
Collecting pyyaml
  Downloading PyYAML-5.1.2.tar.gz (265 kB)
Collecting pyyaml
  Downloading PyYAML-5.1.1.tar.gz (274 kB)
Collecting pyyaml
  Downloading PyYAML-5.1.tar.gz (274 kB)
Collecting pyyaml
  Downloading PyYAML-3.13.tar.gz (270 kB)
Collecting pyyaml
  Downloading PyYAML-3.12.zip (375 kB)
Collecting pyyaml
  Downloading PyYAML-3.11.zip (371 kB)
Collecting pyyaml
  Downloading PyYAML-3.10.zip (364 kB)

[effigies]

Niworkflows 1.3.2 is out. This should be ready for review. (Apologies if CircleCI comes back in 2 hours to prove me wrong...)

[effigies]

All green. @bpinsard @mgxd @oesteban Are we happy with this for 20.2.1?

[oesteban]

Very much needed. Thanks much, I'm totally in favor of including this within the LTS.

[bpinsard]

Great! Looks all good!