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ENH: Save T2starmap files in all requested output spaces, if calculated #2776

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merged 8 commits into from
May 13, 2022
Merged

ENH: Save T2starmap files in all requested output spaces, if calculated #2776

merged 8 commits into from
May 13, 2022

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effigies
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@effigies effigies commented May 9, 2022

Changes proposed in this pull request

Resample T2* map (calculated in BOLD space) to T1w and standard spaces if requested. Sink any of these as functional derivatives.

Unclear what would happen with fsaverage, so will need to test this case.

Documentation that should be reviewed

Need to update expected outputs.

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pep8speaks commented May 9, 2022 •
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Hello @effigies! Thanks for updating this PR. We checked the lines you've touched for PEP 8 issues, and found:

There are currently no PEP 8 issues detected in this Pull Request. Cheers! 🍻

Comment last updated at 2022-05-13 20:38:35 UTC

@effigies effigies force-pushed the enh/sink_t2starmaps branch 4 times, most recently from 9616047 to 0e06835 Compare May 9, 2022 23:18
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@mgxd Any notion why ds005 and ds054 would be timing out?

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mgxd commented May 10, 2022

it seems like they are both stuck on bold_std_trans_wf.outputnode, so definitely something there.

@effigies effigies force-pushed the enh/sink_t2starmaps branch 3 times, most recently from 044a9a5 to 7ff054d Compare May 10, 2022 15:19
@effigies effigies force-pushed the enh/sink_t2starmaps branch 4 times, most recently from c38fe87 to 1275314 Compare May 10, 2022 20:45
effigies
effigies commented May 10, 2022
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@effigies effigies requested a review from emdupre May 10, 2022 20:48
@effigies effigies force-pushed the enh/sink_t2starmaps branch from 5c623fe to a3d9737 Compare May 13, 2022 16:54
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@mgxd final review?

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mgxd reviewed May 13, 2022
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Looks good - only thing is we should update the docstring "Inputs/Outputs" if they are being altered

@effigies effigies merged commit 8648d82 into nipreps:master May 13, 2022
@effigies effigies added this to the 22.0.0 milestone May 17, 2022
@effigies effigies deleted the enh/sink_t2starmaps branch August 24, 2023 03:41
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