CI: Minor updates to CircleCI config to improve resilience

.circleci/config.yml

@@ -87,6 +87,28 @@ _setup_fmriprep_docker: &setup_fmriprep_docker
     pip install --upgrade pip
     pip install --upgrade /tmp/src/fmriprep/wrapper/
 
+_check_outputs: &check_outputs
+  name: Checking outputs of fMRIPrep run
+  command: |
+    set +e -x
+    mkdir -p /tmp/${DATASET}/test
+    find /tmp/${DATASET}/${SUBDIR:-derivatives} \( -path '*/figures' -o -path '*/log' -o -path '*/sourcedata' \) -prune -o -name "*" -print | cut -d/ -f 5- | sort > /tmp/${DATASET}/test/outputs.out
+
+    FASTTRACK_OUTPUTS="${DATASET}${VARIANT}_fasttrack_outputs.txt"
+    FULL_OUTPUTS="${DATASET}${VARIANT}_outputs.txt"
+    RET=1
+    if [ ! -f /tmp/.nofasttrack ]; then
+        echo "Checking fasttrack..."
+        diff /tmp/src/fmriprep/.circleci/${FASTTRACK_OUTPUTS} /tmp/${DATASET}/test/outputs.out
+        RET=$?
+    fi
+    if [ $RET -ne 0 ]; then
+        echo "Checking full..."
+        diff /tmp/src/fmriprep/.circleci/${FULL_OUTPUTS} /tmp/${DATASET}/test/outputs.out
+        RET=$?
+    fi
+    exit $RET
+
 
 version: 2.1
 aliases:
@@ -481,7 +503,7 @@ jobs:
       - run:
           name: Clean-up after anatomical run
           command: |
-            rm -rf /tmp/${DATASET}/work/fmriprep_wf/fsdir*
+            rm -rf /tmp/${DATASET}/work/fmriprep_*_wf/fsdir*
             rm -rf /tmp/${DATASET}/work/reportlets
             rm -rf /tmp/${DATASET}/derivatives/fmriprep
       - save_cache:
@@ -529,21 +551,14 @@ jobs:
             mkdir -p /tmp/${DATASET}/derivatives_partial
             sudo cp -a /tmp/${DATASET}/work /tmp/${DATASET}/work_partial
             sudo cp -a /tmp/${DATASET}/work /tmp/${DATASET}/work_bids
-            sudo rm -rf /tmp/${DATASET}/work_partial/fmriprep_wf/single_subject_01_wf/func_preproc_task_mixedgamblestask_run_02_wf/ica_aroma_wf
+            sudo rm -rf /tmp/${DATASET}/work_partial/fmriprep_*_wf/single_subject_01_wf/func_preproc_task_mixedgamblestask_run_02_wf/ica_aroma_wf
             # Nipype sometimes fails to pick up when the base directory changes
             # This is a cheap workflow, so let's not fuss
-            sudo rm -rf /tmp/${DATASET}/work /tmp/${DATASET}/work_bids/fmriprep_wf/single_subject_01_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf || true
+            sudo rm -rf /tmp/${DATASET}/work /tmp/${DATASET}/work_bids/fmriprep_*_wf/single_subject_01_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf || true
       - run:
-          name: Checking outputs of full fMRIPrep run
-          command: |
-            mkdir -p /tmp/${DATASET}/test
-            CHECK_OUTPUTS_FILE="${DATASET}_legacy_fasttrack_outputs.txt"
-            if [ -f /tmp/.nofasttrack ]; then
-                CHECK_OUTPUTS_FILE="${DATASET}_legacy_outputs.txt"
-            fi
-            find /tmp/${DATASET}/derivatives \( -path */figures -o -path */log \) -prune -o -name "*" -print | sed s+/tmp/${DATASET}/derivatives/++ | sort > /tmp/${DATASET}/test/outputs.out
-            diff /tmp/src/fmriprep/.circleci/${CHECK_OUTPUTS_FILE} /tmp/${DATASET}/test/outputs.out
-            exit $?
+          <<: *check_outputs
+          environment:
+            VARIANT: '_legacy'
       - run:
           name: Prepare BIDS Derivatives dataset
           command: |
@@ -570,16 +585,10 @@ jobs:
           path: /tmp/ds005/bids
           destination: bids-run
       - run:
-          name: Checking outputs of partial fMRIPrep run
-          command: |
-            mkdir -p /tmp/${DATASET}/test
-            CHECK_OUTPUTS_FILE="${DATASET}_bids_fasttrack_outputs.txt"
-            if [ -f /tmp/.nofasttrack ]; then
-                CHECK_OUTPUTS_FILE="${DATASET}_bids_outputs.txt"
-            fi
-            find /tmp/${DATASET}/bids \( -path */figures -o -path */log \) -prune -o -name "*" -print | sed s+/tmp/${DATASET}/++ | grep -v sourcedata | sort > /tmp/${DATASET}/test/outputs.out
-            diff /tmp/src/fmriprep/.circleci/${CHECK_OUTPUTS_FILE} /tmp/${DATASET}/test/outputs.out
-            exit $?
+          <<: *check_outputs
+          environment:
+            VARIANT: '_bids'
+            SUBDIR: 'bids'
       - run:
           name: Re-run fMRIPrep on single run of task data
           no_output_timeout: 2h
@@ -605,17 +614,10 @@ jobs:
           path: /tmp/ds005/derivatives_partial
           destination: partial-run
       - run:
-          name: Checking outputs of partial fMRIPrep run
-          command: |
-            mkdir -p /tmp/${DATASET}/test
-            CHECK_OUTPUTS_FILE="${DATASET}_legacy_partial_fasttrack_outputs.txt"
-            if [ -f /tmp/.nofasttrack ]; then
-                CHECK_OUTPUTS_FILE="${DATASET}_legacy_partial_outputs.txt"
-            fi
-            sudo rm -rf /tmp/${DATASET}/derivatives_partial/freesurfer
-            find /tmp/${DATASET}/derivatives_partial \( -path */figures -o -path */log \) -prune -o -name "*" -print | sed s+/tmp/${DATASET}/derivatives_partial/++ | sort > /tmp/${DATASET}/test/outputs.out
-            diff /tmp/src/fmriprep/.circleci/${CHECK_OUTPUTS_FILE} /tmp/${DATASET}/test/outputs.out
-            exit $?
+          <<: *check_outputs
+          environment:
+            VARIANT: '_legacy_partial'
+            SUBDIR: 'derivatives_partial'
       - run:
           name: Clean working directory
           when: on_success
@@ -688,7 +690,7 @@ jobs:
       - run:
           name: Clean-up after anatomical run
           command: |
-            rm -rf /tmp/${DATASET}/work/fmriprep_wf/fsdir*
+            rm -rf /tmp/${DATASET}/work/fmriprep_*_wf/fsdir*
             rm -rf /tmp/${DATASET}/work/reportlets
             rm -rf /tmp/${DATASET}/derivatives/fmriprep
       - save_cache:
@@ -713,17 +715,7 @@ jobs:
                 --fs-no-reconall --sloppy \
                 --output-spaces MNI152NLin2009cAsym:res-2 anat func \
                 --mem-mb 14336 --nthreads 4 -vv --debug compcor
-      - run:
-          name: Checking outputs of fMRIPrep
-          command: |
-            mkdir -p /tmp/${DATASET}/test
-            CHECK_OUTPUTS_FILE="${DATASET}_fasttrack_outputs.txt"
-            if [ -f /tmp/.nofasttrack ]; then
-                CHECK_OUTPUTS_FILE="${DATASET}_outputs.txt"
-            fi
-            find /tmp/${DATASET}/derivatives \( -path */figures -o -path */log \) -prune -o -name "*" -print | sed s+/tmp/${DATASET}/derivatives/++ | sort > /tmp/${DATASET}/test/outputs.out
-            diff /tmp/src/fmriprep/.circleci/${CHECK_OUTPUTS_FILE} /tmp/${DATASET}/test/outputs.out
-            exit $?
+      - run: *check_outputs
       - run:
           name: Generate report with one artificial error
           command: |
@@ -814,7 +806,7 @@ jobs:
       - run:
           name: Clean-up after anatomical run
           command: |
-            rm -rf /tmp/${DATASET}/work/fmriprep_wf/fsdir*
+            rm -rf /tmp/${DATASET}/work/fmriprep_*_wf/fsdir*
             rm -rf /tmp/${DATASET}/work/reportlets
             rm -rf /tmp/${DATASET}/derivatives/fmriprep
       - save_cache:
@@ -853,17 +845,7 @@ jobs:
                 --dummy-scans 1 --sloppy --write-graph \
                 --output-spaces MNI152NLin2009cAsym \
                 --mem-mb 14336 --nthreads 4 -vv
-      - run:
-          name: Checking outputs of fMRIPrep
-          command: |
-            mkdir -p /tmp/${DATASET}/test
-            CHECK_OUTPUTS_FILE="${DATASET}_fasttrack_outputs.txt"
-            if [ -f /tmp/.nofasttrack ]; then
-                CHECK_OUTPUTS_FILE="${DATASET}_outputs.txt"
-            fi
-            find /tmp/${DATASET}/derivatives \( -path */figures -o -path */log \) -prune -o -name "*" -print | sed s+/tmp/${DATASET}/derivatives/++ | sort > /tmp/${DATASET}/test/outputs.out
-            diff /tmp/src/fmriprep/.circleci/${CHECK_OUTPUTS_FILE} /tmp/${DATASET}/test/outputs.out
-            exit $?
+      - run: *check_outputs
       - run:
           name: Clean working directory
           when: on_success

.circleci/ds005_bids_fasttrack_outputs.txt

@@ -1,33 +1,33 @@
-bids
-bids/.bidsignore
-bids/dataset_description.json
-bids/desc-aparcaseg_dseg.tsv
-bids/desc-aseg_dseg.tsv
-bids/logs
-bids/logs/CITATION.bib
-bids/logs/CITATION.html
-bids/logs/CITATION.md
-bids/logs/CITATION.tex
-bids/sub-01
-bids/sub-01/func
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-01_boldref.nii.gz
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-01_desc-confounds_timeseries.json
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-01_desc-confounds_timeseries.tsv
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-01_from-scanner_to-boldref_mode-image_xfm.txt
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-01_from-scanner_to-T1w_mode-image_xfm.txt
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-01_from-T1w_to-scanner_mode-image_xfm.txt
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-01_hemi-L_space-fsaverage5_bold.func.gii
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-01_hemi-L_space-fsaverage5_bold.json
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-01_hemi-R_space-fsaverage5_bold.func.gii
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-01_hemi-R_space-fsaverage5_bold.json
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-02_boldref.nii.gz
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-02_desc-confounds_timeseries.json
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-02_desc-confounds_timeseries.tsv
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-02_from-scanner_to-boldref_mode-image_xfm.txt
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-02_from-scanner_to-T1w_mode-image_xfm.txt
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-02_from-T1w_to-scanner_mode-image_xfm.txt
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-02_hemi-L_space-fsaverage5_bold.func.gii
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-02_hemi-L_space-fsaverage5_bold.json
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-02_hemi-R_space-fsaverage5_bold.func.gii
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-02_hemi-R_space-fsaverage5_bold.json
-bids/sub-01.html
+
+.bidsignore
+dataset_description.json
+desc-aparcaseg_dseg.tsv
+desc-aseg_dseg.tsv
+logs
+logs/CITATION.bib
+logs/CITATION.html
+logs/CITATION.md
+logs/CITATION.tex
+sub-01
+sub-01/func
+sub-01/func/sub-01_task-mixedgamblestask_run-01_boldref.nii.gz
+sub-01/func/sub-01_task-mixedgamblestask_run-01_desc-confounds_timeseries.json
+sub-01/func/sub-01_task-mixedgamblestask_run-01_desc-confounds_timeseries.tsv
+sub-01/func/sub-01_task-mixedgamblestask_run-01_from-scanner_to-boldref_mode-image_xfm.txt
+sub-01/func/sub-01_task-mixedgamblestask_run-01_from-scanner_to-T1w_mode-image_xfm.txt
+sub-01/func/sub-01_task-mixedgamblestask_run-01_from-T1w_to-scanner_mode-image_xfm.txt
+sub-01/func/sub-01_task-mixedgamblestask_run-01_hemi-L_space-fsaverage5_bold.func.gii
+sub-01/func/sub-01_task-mixedgamblestask_run-01_hemi-L_space-fsaverage5_bold.json
+sub-01/func/sub-01_task-mixedgamblestask_run-01_hemi-R_space-fsaverage5_bold.func.gii
+sub-01/func/sub-01_task-mixedgamblestask_run-01_hemi-R_space-fsaverage5_bold.json
+sub-01/func/sub-01_task-mixedgamblestask_run-02_boldref.nii.gz
+sub-01/func/sub-01_task-mixedgamblestask_run-02_desc-confounds_timeseries.json
+sub-01/func/sub-01_task-mixedgamblestask_run-02_desc-confounds_timeseries.tsv
+sub-01/func/sub-01_task-mixedgamblestask_run-02_from-scanner_to-boldref_mode-image_xfm.txt
+sub-01/func/sub-01_task-mixedgamblestask_run-02_from-scanner_to-T1w_mode-image_xfm.txt
+sub-01/func/sub-01_task-mixedgamblestask_run-02_from-T1w_to-scanner_mode-image_xfm.txt
+sub-01/func/sub-01_task-mixedgamblestask_run-02_hemi-L_space-fsaverage5_bold.func.gii
+sub-01/func/sub-01_task-mixedgamblestask_run-02_hemi-L_space-fsaverage5_bold.json
+sub-01/func/sub-01_task-mixedgamblestask_run-02_hemi-R_space-fsaverage5_bold.func.gii
+sub-01/func/sub-01_task-mixedgamblestask_run-02_hemi-R_space-fsaverage5_bold.json
+sub-01.html

.circleci/ds005_bids_outputs.txt

@@ -1,62 +1,63 @@
-bids
-bids/.bidsignore
-bids/dataset_description.json
-bids/desc-aparcaseg_dseg.tsv
-bids/desc-aseg_dseg.tsv
-bids/logs
-bids/logs/CITATION.bib
-bids/logs/CITATION.html
-bids/logs/CITATION.md
-bids/logs/CITATION.tex
-bids/sub-01
-bids/sub-01/anat
-bids/sub-01/anat/sub-01_desc-aparcaseg_dseg.nii.gz
-bids/sub-01/anat/sub-01_desc-aseg_dseg.nii.gz
-bids/sub-01/anat/sub-01_desc-brain_mask.json
-bids/sub-01/anat/sub-01_desc-brain_mask.nii.gz
-bids/sub-01/anat/sub-01_desc-preproc_T1w.json
-bids/sub-01/anat/sub-01_desc-preproc_T1w.nii.gz
-bids/sub-01/anat/sub-01_dseg.nii.gz
-bids/sub-01/anat/sub-01_from-fsnative_to-T1w_mode-image_xfm.txt
-bids/sub-01/anat/sub-01_from-MNI152NLin2009cAsym_to-T1w_mode-image_xfm.h5
-bids/sub-01/anat/sub-01_from-T1w_to-fsnative_mode-image_xfm.txt
-bids/sub-01/anat/sub-01_from-T1w_to-MNI152NLin2009cAsym_mode-image_xfm.h5
-bids/sub-01/anat/sub-01_hemi-L_curv.shape.gii
-bids/sub-01/anat/sub-01_hemi-L_inflated.surf.gii
-bids/sub-01/anat/sub-01_hemi-L_midthickness.surf.gii
-bids/sub-01/anat/sub-01_hemi-L_pial.surf.gii
-bids/sub-01/anat/sub-01_hemi-L_smoothwm.surf.gii
-bids/sub-01/anat/sub-01_hemi-L_sulc.shape.gii
-bids/sub-01/anat/sub-01_hemi-L_thickness.shape.gii
-bids/sub-01/anat/sub-01_hemi-R_curv.shape.gii
-bids/sub-01/anat/sub-01_hemi-R_inflated.surf.gii
-bids/sub-01/anat/sub-01_hemi-R_midthickness.surf.gii
-bids/sub-01/anat/sub-01_hemi-R_pial.surf.gii
-bids/sub-01/anat/sub-01_hemi-R_smoothwm.surf.gii
-bids/sub-01/anat/sub-01_hemi-R_sulc.shape.gii
-bids/sub-01/anat/sub-01_hemi-R_thickness.shape.gii
-bids/sub-01/anat/sub-01_label-CSF_probseg.nii.gz
-bids/sub-01/anat/sub-01_label-GM_probseg.nii.gz
-bids/sub-01/anat/sub-01_label-WM_probseg.nii.gz
-bids/sub-01/func
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-01_boldref.nii.gz
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-01_desc-confounds_timeseries.json
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-01_desc-confounds_timeseries.tsv
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-01_from-scanner_to-boldref_mode-image_xfm.txt
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-01_from-scanner_to-T1w_mode-image_xfm.txt
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-01_from-T1w_to-scanner_mode-image_xfm.txt
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-01_hemi-L_space-fsaverage5_bold.func.gii
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-01_hemi-L_space-fsaverage5_bold.json
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-01_hemi-R_space-fsaverage5_bold.func.gii
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-01_hemi-R_space-fsaverage5_bold.json
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-02_boldref.nii.gz
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-02_desc-confounds_timeseries.json
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-02_desc-confounds_timeseries.tsv
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-02_from-scanner_to-boldref_mode-image_xfm.txt
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-02_from-scanner_to-T1w_mode-image_xfm.txt
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-02_from-T1w_to-scanner_mode-image_xfm.txt
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-02_hemi-L_space-fsaverage5_bold.func.gii
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-02_hemi-L_space-fsaverage5_bold.json
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-02_hemi-R_space-fsaverage5_bold.func.gii
-bids/sub-01/func/sub-01_task-mixedgamblestask_run-02_hemi-R_space-fsaverage5_bold.json
-bids/sub-01.html
+
+.bidsignore
+dataset_description.json
+desc-aparcaseg_dseg.tsv
+desc-aseg_dseg.tsv
+logs
+logs/CITATION.bib
+logs/CITATION.html
+logs/CITATION.md
+logs/CITATION.tex
+sub-01
+sub-01/anat
+sub-01/anat/sub-01_desc-aparcaseg_dseg.nii.gz
+sub-01/anat/sub-01_desc-aseg_dseg.nii.gz
+sub-01/anat/sub-01_desc-brain_mask.json
+sub-01/anat/sub-01_desc-brain_mask.nii.gz
+sub-01/anat/sub-01_desc-preproc_T1w.json
+sub-01/anat/sub-01_desc-preproc_T1w.nii.gz
+sub-01/anat/sub-01_desc-ribbon_mask.nii.gz
+sub-01/anat/sub-01_dseg.nii.gz
+sub-01/anat/sub-01_from-fsnative_to-T1w_mode-image_xfm.txt
+sub-01/anat/sub-01_from-MNI152NLin2009cAsym_to-T1w_mode-image_xfm.h5
+sub-01/anat/sub-01_from-T1w_to-fsnative_mode-image_xfm.txt
+sub-01/anat/sub-01_from-T1w_to-MNI152NLin2009cAsym_mode-image_xfm.h5
+sub-01/anat/sub-01_hemi-L_curv.shape.gii
+sub-01/anat/sub-01_hemi-L_inflated.surf.gii
+sub-01/anat/sub-01_hemi-L_midthickness.surf.gii
+sub-01/anat/sub-01_hemi-L_pial.surf.gii
+sub-01/anat/sub-01_hemi-L_smoothwm.surf.gii
+sub-01/anat/sub-01_hemi-L_sulc.shape.gii
+sub-01/anat/sub-01_hemi-L_thickness.shape.gii
+sub-01/anat/sub-01_hemi-R_curv.shape.gii
+sub-01/anat/sub-01_hemi-R_inflated.surf.gii
+sub-01/anat/sub-01_hemi-R_midthickness.surf.gii
+sub-01/anat/sub-01_hemi-R_pial.surf.gii
+sub-01/anat/sub-01_hemi-R_smoothwm.surf.gii
+sub-01/anat/sub-01_hemi-R_sulc.shape.gii
+sub-01/anat/sub-01_hemi-R_thickness.shape.gii
+sub-01/anat/sub-01_label-CSF_probseg.nii.gz
+sub-01/anat/sub-01_label-GM_probseg.nii.gz
+sub-01/anat/sub-01_label-WM_probseg.nii.gz
+sub-01/func
+sub-01/func/sub-01_task-mixedgamblestask_run-01_boldref.nii.gz
+sub-01/func/sub-01_task-mixedgamblestask_run-01_desc-confounds_timeseries.json
+sub-01/func/sub-01_task-mixedgamblestask_run-01_desc-confounds_timeseries.tsv
+sub-01/func/sub-01_task-mixedgamblestask_run-01_from-scanner_to-boldref_mode-image_xfm.txt
+sub-01/func/sub-01_task-mixedgamblestask_run-01_from-scanner_to-T1w_mode-image_xfm.txt
+sub-01/func/sub-01_task-mixedgamblestask_run-01_from-T1w_to-scanner_mode-image_xfm.txt
+sub-01/func/sub-01_task-mixedgamblestask_run-01_hemi-L_space-fsaverage5_bold.func.gii
+sub-01/func/sub-01_task-mixedgamblestask_run-01_hemi-L_space-fsaverage5_bold.json
+sub-01/func/sub-01_task-mixedgamblestask_run-01_hemi-R_space-fsaverage5_bold.func.gii
+sub-01/func/sub-01_task-mixedgamblestask_run-01_hemi-R_space-fsaverage5_bold.json
+sub-01/func/sub-01_task-mixedgamblestask_run-02_boldref.nii.gz
+sub-01/func/sub-01_task-mixedgamblestask_run-02_desc-confounds_timeseries.json
+sub-01/func/sub-01_task-mixedgamblestask_run-02_desc-confounds_timeseries.tsv
+sub-01/func/sub-01_task-mixedgamblestask_run-02_from-scanner_to-boldref_mode-image_xfm.txt
+sub-01/func/sub-01_task-mixedgamblestask_run-02_from-scanner_to-T1w_mode-image_xfm.txt
+sub-01/func/sub-01_task-mixedgamblestask_run-02_from-T1w_to-scanner_mode-image_xfm.txt
+sub-01/func/sub-01_task-mixedgamblestask_run-02_hemi-L_space-fsaverage5_bold.func.gii
+sub-01/func/sub-01_task-mixedgamblestask_run-02_hemi-L_space-fsaverage5_bold.json
+sub-01/func/sub-01_task-mixedgamblestask_run-02_hemi-R_space-fsaverage5_bold.func.gii
+sub-01/func/sub-01_task-mixedgamblestask_run-02_hemi-R_space-fsaverage5_bold.json
+sub-01.html

.circleci/ds005_legacy_fasttrack_outputs.txt

@@ -1,3 +1,4 @@
+
 fmriprep
 fmriprep/.bidsignore
 fmriprep/dataset_description.json
@@ -39,4 +40,3 @@ fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_hemi-R_space-fsaverage5
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_hemi-R_space-fsnative_bold.func.gii
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_hemi-R_space-fsnative_bold.json
 fmriprep/sub-01.html
-/tmp/ds005/derivatives

.circleci/ds005_legacy_outputs.txt

@@ -1,3 +1,4 @@
+
 fmriprep
 fmriprep/.bidsignore
 fmriprep/dataset_description.json
@@ -16,6 +17,7 @@ fmriprep/sub-01/anat/sub-01_desc-brain_mask.json
 fmriprep/sub-01/anat/sub-01_desc-brain_mask.nii.gz
 fmriprep/sub-01/anat/sub-01_desc-preproc_T1w.json
 fmriprep/sub-01/anat/sub-01_desc-preproc_T1w.nii.gz
+fmriprep/sub-01/anat/sub-01_desc-ribbon_mask.nii.gz
 fmriprep/sub-01/anat/sub-01_dseg.nii.gz
 fmriprep/sub-01/anat/sub-01_from-fsnative_to-T1w_mode-image_xfm.txt
 fmriprep/sub-01/anat/sub-01_from-MNI152NLin2009cAsym_to-T1w_mode-image_xfm.h5
@@ -68,4 +70,3 @@ fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_hemi-R_space-fsaverage5
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_hemi-R_space-fsnative_bold.func.gii
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_hemi-R_space-fsnative_bold.json
 fmriprep/sub-01.html
-/tmp/ds005/derivatives

.circleci/ds005_legacy_partial_fasttrack_outputs.txt

@@ -1,3 +1,4 @@
+
 fmriprep
 fmriprep/.bidsignore
 fmriprep/dataset_description.json
@@ -58,4 +59,3 @@ fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_space-T1w_desc-brain_ma
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_space-T1w_desc-preproc_bold.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_space-T1w_desc-preproc_bold.nii.gz
 fmriprep/sub-01.html
-/tmp/ds005/derivatives_partial