[MAINT] Overdue refactor #736

oesteban · 2018-08-15T08:01:39Z

[FIX] Reorganize outputs (closes Restructuring outputs #396)
[ENH] Memory usage - lessons learned with FMRIPREP (Memory usage - lessons learned with FMRIPREP #703)
[FIX] Cannot allocate memory (v 0.9.4) (closes mriqc docker Cannot allocate memory (v 0.9.4) #536)
[FIX] Drop inoperative --report-dir flag (--report-dir flag inoperative #550)
[FIX] Drop misleading WARNING of the group-level execution (Misleading WARNING of the group-level execution. #714)
[FIX] Expand usernames on input paths (mriqc -w ~user does not expand ~user #721)
[MAINT] More robust naming of derivatives (related to Link to non existing "run-nan" in a group report #661)

oesteban added 14 commits August 14, 2018 20:12

starting refactor: splitting workflow creation to process

cf7a657

write outputs in a more BIDS-like fashion nipreps#396

c31ab47

drop --report-dir flag. close nipreps#550

47fa766

fix syntax error

d9dbbda

revised memory annotations. close nipreps#703

a00abe7

fix use_plugin option

6cce2e8

remove misleading warning. close nipreps#714

8ead1f8

revise remaining usage of Path

ec32938

finishing fixes

992ee49

fix outputs in circle

ea4da24

fix paths in circle tests

680d1dc

expand user on paths. close nipreps#721

1b4b699

fix artifact indexes

77631c6

fix testdata paths

1af500c

oesteban merged commit c01b616 into nipreps:master Aug 15, 2018

oesteban deleted the enh/memory-usage branch August 15, 2018 20:49

oesteban mentioned this pull request Apr 5, 2020

mriqc docker Cannot allocate memory (v 0.9.4) #536

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