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ENH: Add preprocessed T2w volume to outputs #271

Merged
merged 5 commits into from
Jan 18, 2023
Merged

ENH: Add preprocessed T2w volume to outputs #271

merged 5 commits into from
Jan 18, 2023

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madisoth
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@madisoth madisoth commented Jan 9, 2023

  • output preprocessed T2w volume as "space-T1w_desc-preproc_T2w.nii.gz"
  • If input includes T1w volume, T2w volume, and precomputed T1w mask, use SDCFlows brain extraction wf for T2w which avoids doing redundant brain extraction of T1w

@madisoth madisoth changed the base branch from enh/mirtk to master January 13, 2023 18:37
@GregConan GregConan mentioned this pull request Jan 13, 2023
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@mgxd mgxd changed the title Preproc T2w volume ENH: Add preprocessed T2w volume to outputs Jan 18, 2023
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mgxd approved these changes Jan 18, 2023
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LGTM, thanks @madisoth

@mgxd mgxd merged commit 737e62c into nipreps:master Jan 18, 2023
@mgxd mgxd added this to the 23.0.0 milestone Jan 20, 2023
@mgxd mgxd mentioned this pull request Jun 22, 2024
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@mgxd mgxd mgxd approved these changes

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@madisoth @mgxd @GregConan