Tox #2072
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Tox | |
| on: | |
| push: | |
| branches: [ '**' ] | |
| tags: [ '*' ] | |
| pull_request: | |
| branches: [ master, 'maint/*' ] | |
| schedule: | |
| - cron: '0 0 * * *' | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| permissions: | |
| contents: read | |
| env: | |
| # Force tox and pytest to use color | |
| FORCE_COLOR: true | |
| jobs: | |
| build: | |
| if: github.repository == 'nipreps/niworkflows' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python 3 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3 | |
| - name: Display Python version | |
| run: python -c "import sys; print(sys.version)" | |
| - name: Build niworkflows | |
| run: pipx run build | |
| - name: Check distributions | |
| run: pipx run twine check dist/* | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: dist | |
| path: dist/ | |
| get_data: | |
| if: github.repository == 'nipreps/niworkflows' | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Create test data directory | |
| run: mkdir -p $HOME/.cache/stanford-crn | |
| - name: Load test data cache | |
| uses: actions/cache@v4 | |
| id: stanford-crn | |
| with: | |
| path: ~/.cache/stanford-crn/ | |
| key: data-v0-${{ github.ref_name }}-${{ github.sha }} | |
| restore-keys: | | |
| data-v0-${{ github.ref_name }}- | |
| data-v0- | |
| - name: Setup conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-activate-base: true | |
| activate-environment: "" | |
| - name: Verify environment | |
| run: | | |
| conda info | |
| which python | |
| - name: Install datalad | |
| run: | | |
| python -m pip install datalad-installer | |
| datalad-installer --sudo ok git-annex | |
| python -m pip install datalad datalad-osf | |
| datalad wtf | |
| - name: Pacify git | |
| run: | | |
| git config --global user.email "github@niworkflows.ci" | |
| git config --global user.name "Niworkflows Action" | |
| - name: Fetch test data | |
| run: | | |
| DS=$HOME/.cache/stanford-crn | |
| datalad install -r -s https://github.com/nipreps-data/niworkflows-data.git $DS | |
| cd $DS | |
| git -C BIDS-examples-1-enh-ds054 checkout enh/ds054 | |
| datalad update -r --merge -d . | |
| datalad get -J 2 -r ds000003 ds000030/sub-10228/func | |
| test: | |
| needs: [get_data] | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| dependencies: [latest, pre] | |
| include: | |
| - python-version: "3.9" | |
| dependencies: min | |
| exclude: | |
| # Do not test pre-releases for versions out of SPEC0 | |
| - python-version: "3.9" | |
| dependencies: pre | |
| - python-version: "3.10" | |
| dependencies: pre | |
| env: | |
| DEPENDS: ${{ matrix.dependencies }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| fetch-depth: 0 | |
| - name: Install the latest version of uv | |
| uses: astral-sh/setup-uv@v3 | |
| - name: Load test data cache | |
| uses: actions/cache@v4 | |
| id: stanford-crn | |
| with: | |
| path: ~/.cache/stanford-crn/ | |
| key: data-v0-${{ github.ref_name }}-${{ github.sha }} | |
| - name: Load TemplateFlow cache | |
| uses: actions/cache@v4 | |
| id: templateflow | |
| with: | |
| path: ~/.cache/templateflow | |
| key: templateflow-v0-${{ github.ref_name }}-${{ strategy.job-index }}-${{ github.sha }} | |
| restore-keys: | | |
| templateflow-v0-${{ github.ref_name }}- | |
| templateflow-v0- | |
| - uses: actions/cache@v4 | |
| with: | |
| path: ~/.cache/templateflow | |
| key: templateflow-v1 | |
| - name: Install dependencies | |
| run: | | |
| sudo apt update | |
| sudo apt install -y --no-install-recommends graphviz | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Display Python version | |
| run: python -c "import sys; print(sys.version)" | |
| - name: Install tox | |
| run: | | |
| uv tool install tox --with=tox-uv --with=tox-gh-actions | |
| - name: Show tox config | |
| run: tox c | |
| - name: Run tox | |
| run: tox -v --exit-and-dump-after 1200 | |
| - uses: codecov/codecov-action@v4 | |
| with: | |
| file: coverage.xml | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| if: ${{ always() }} | |
| flake8: | |
| if: github.event_name != 'schedule' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3 | |
| - run: pipx run flake8 niworkflows/ |