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Nitzan Lab

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  1. biolord biolord Public

    Python 70 5

  2. scPrisma scPrisma Public

    scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underlying cyclic signals

    Jupyter Notebook 17 2

  3. Annotatability Annotatability Public

    Annotatability, a method to identify meaningful patterns in single-cell genomics data through annotation-trainability analysis, which estimates annotation congruence using a rich but often overlook…

    Python 13 2

  4. phase2vec phase2vec Public

    Embeddings for dynamical systems

    Jupyter Notebook 10 3

  5. sift-sc sift-sc Public

    Python 5

  6. time-warp-attend time-warp-attend Public

    Jupyter Notebook 2 1

Repositories

Showing 10 of 17 repositories
  • Annotatability Public

    Annotatability, a method to identify meaningful patterns in single-cell genomics data through annotation-trainability analysis, which estimates annotation congruence using a rich but often overlooked signal, namely the training dynamics of a deep neural network.

    nitzanlab/Annotatability’s past year of commit activity
    Python 13 MIT 2 0 0 Updated Dec 19, 2024
  • Annotatability_notebooks Public

    Reproducibility of "Annotatability" results

    nitzanlab/Annotatability_notebooks’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 2, 2024
  • gep-dynamics Public

    Examining the dynamics of Gene Expression Programs (a.k.a. metagenes) at different time scales

    nitzanlab/gep-dynamics’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Aug 12, 2024
  • biolord Public
    nitzanlab/biolord’s past year of commit activity
    Python 70 BSD-3-Clause 5 0 1 Updated Aug 12, 2024
  • bioIB Public

    bioIB package for scRNA-seq analysis

    nitzanlab/bioIB’s past year of commit activity
    Jupyter Notebook 2 0 1 0 Updated Jul 17, 2024
  • sift-sc-reproducibility Public

    reproducibility code for SiFT manuscript https://doi.org/10.1101/2023.01.18.524512

    nitzanlab/sift-sc-reproducibility’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Jun 25, 2024
  • biolord_reproducibility Public

    Reproducibility repository for the biolord publication.

    nitzanlab/biolord_reproducibility’s past year of commit activity
    Jupyter Notebook 1 BSD-3-Clause 0 0 0 Updated Apr 26, 2024
  • scPrisma Public

    scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underlying cyclic signals

    nitzanlab/scPrisma’s past year of commit activity
    Jupyter Notebook 17 MIT 2 0 0 Updated Mar 31, 2024
  • trajectory_reconstruction_tradeoff Public
    nitzanlab/trajectory_reconstruction_tradeoff’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Mar 20, 2024
  • time-warp-attend Public
    nitzanlab/time-warp-attend’s past year of commit activity
    Jupyter Notebook 2 1 0 0 Updated Mar 6, 2024
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