Fix ALK section to say it is disabled #167
Workflow file for this run
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| name: build html version of the ss3 user manual | |
| on: | |
| push: | |
| paths: | |
| - '**.tex' | |
| - 'html_usermanual_snippets.html' | |
| - '**.yml' | |
| pull_request: | |
| paths: | |
| - '**.tex' | |
| - 'html_usermanual_snippets.html' | |
| - '**.yml' | |
| workflow_call: | |
| inputs: | |
| ref: | |
| default: ${{ github.ref }} | |
| required: false | |
| type: string | |
| jobs: | |
| build-html: | |
| runs-on: ubuntu-20.04 | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| RSPM: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest" | |
| steps: | |
| - name: Set up Git repository | |
| uses: actions/checkout@v3 | |
| with: | |
| ref: ${{ inputs.ref }} | |
| - name: Update Ubuntu packages | |
| run: sudo apt-get update | |
| - name: Set up R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: 'release' | |
| - name: setup pandoc | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| with: | |
| pandoc-version: '2.14.0.3' | |
| - name: Convert tex to html | |
| run: pandoc SS330_User_Manual.tex -s -o SS330_User_Manual.html --toc --self-contained --mathjax --default-image-extension=png --number-sections --citeproc --variable linkcolor=#0033CC | |
| # Note: for the following R code, may be a single command to deal with the double header issue before rendering. | |
| - name: Edit html to improve formatting | |
| run: | | |
| html_txt <- readLines("SS330_User_Manual.html") | |
| #read html snippits to add | |
| html_snips <- readLines("html_usermanual_snippets.html") | |
| # remove inline style | |
| style_sec <- grep("style>", html_txt) | |
| html_txt <- html_txt[-(style_sec[1]:style_sec[2])] | |
| # add in the navbar | |
| navbar_snip <- grep("div", html_snips) | |
| navbar_snip <- html_snips[navbar_snip[1]:navbar_snip[2]] | |
| html_txt <- append(html_txt, navbar_snip, after = grep("<html", html_txt)) | |
| html_txt <- gsub( | |
| "<p>_add:nnn<span>Catalog</span><span>Lang</span><span>(enUS)</span></p>", | |
| "", html_txt, fixed = TRUE) | |
| # add link to css | |
| css_snip <- grep("<link", html_snips, value = TRUE) | |
| html_txt <- append(html_txt, css_snip, after = grep("<title>", html_txt)) | |
| # Add styling to tables add 1 because first col is on next row | |
| first_lines <- grep("^<tr class=[[:punct:]]{1}[oe]", html_txt) + 1 | |
| tmp_lines <- html_txt[first_lines] | |
| tmp_lines <- gsub("<td style=\"text-align: left;\">", | |
| "<td style=\"text-align: left;white-space: nowrap;\">", | |
| tmp_lines) | |
| html_txt[first_lines] <- tmp_lines | |
| # remove Typical Value double header | |
| label <- grep(">Typical Value<", html_txt, fixed = TRUE) | |
| diff_label <- diff(label) | |
| to_rm <- which(diff_label <10) | |
| # one to get rid of is test | |
| to_rm_lines <- label[to_rm+1] | |
| for (i in to_rm_lines) { | |
| start <- grep("<tr", html_txt, fixed = TRUE) | |
| end <- grep("/tr", html_txt, fixed = TRUE) | |
| start <- max(start[start %in% (i-5):(i-1)]) | |
| end <- min(end[end %in% (i+1):(i+5)]) | |
| if(length(start) == 1 & length(end) == 1) { | |
| html_txt[start:end] <- "" | |
| } | |
| } | |
| # remove Value double header | |
| label <- grep(">Value<", html_txt, fixed = TRUE) | |
| diff_label <- diff(label) | |
| to_rm <- which(diff_label <10) | |
| to_rm_lines <- label[to_rm+1] | |
| for (i in to_rm_lines) { | |
| start <- grep("<tr", html_txt, fixed = TRUE) | |
| end <- grep("/tr", html_txt, fixed = TRUE) | |
| start <- max(start[start %in% (i-5):(i-1)]) | |
| end <- min(end[end %in% (i+1):(i+5)]) | |
| if(length(start) == 1 & length(end) == 1) { | |
| html_txt[start:end] <- "" | |
| } | |
| } | |
| # remove LO HI INIT etc double header | |
| label <- grep(">LO<", html_txt, fixed = TRUE) | |
| diff_label <- diff(label) | |
| to_rm <- which(diff_label < 20) | |
| to_rm_lines <- label[to_rm+1] | |
| for (i in to_rm_lines) { | |
| start <- grep("<tr", html_txt, fixed = TRUE) | |
| end <- grep("/tr", html_txt, fixed = TRUE) | |
| start <- max(start[start %in% (i-10):(i-1)]) | |
| end <- min(end[end %in% (i+1):(i+10)]) | |
| if(length(start) == 1 & length(end) == 1) { | |
| html_txt[start:end] <- "" | |
| } | |
| } | |
| # remove Pattern N Parameters etc double header | |
| label <- grep(">N Parameters<", html_txt, fixed = T) | |
| diff_label <- diff(label) | |
| to_rm <- which(diff_label == 5) | |
| to_rm_lines <- label[to_rm+1] | |
| for (i in to_rm_lines) { | |
| start <- grep("<tr", html_txt, fixed = TRUE) | |
| end <- grep("/tr", html_txt, fixed = TRUE) | |
| start <- max(start[start %in% (i-2):(i-1)]) | |
| end <- min(end[end %in% (i+1):(i+2)]) | |
| if(length(start) == 1 & length(end) == 1) { | |
| html_txt[start:end] <- "" | |
| } | |
| } | |
| # Add title to table of contents | |
| where_add <- grep('<nav id="TOC" role="doc-toc">', | |
| html_txt, fixed = TRUE) | |
| html_txt <- append(html_txt, | |
| "<h1>Table of Contents</h1>", | |
| after = where_add[1]) | |
| # Add title to references | |
| where_add <- (grep("references csl-bib-body hanging-indent", | |
| html_txt, fixed = TRUE) - 1) | |
| html_txt <- append(html_txt, | |
| '<h1 data-number="17" id="sec:references"><span class="header-section-number">17</span> References</h1>', | |
| after = where_add) | |
| # Add references to table of contents | |
| where_add <- grep("</nav>", html_txt, fixed = TRUE)-2 | |
| html_txt <- append(html_txt, | |
| '<li><a href="#sec:references"><span class="toc-section-number">17</span> References</a></li>', | |
| after = where_add) | |
| writeLines(html_txt, "SS330_User_Manual.html") | |
| shell: Rscript {0} | |
| - name: upload html file as artifact | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: SS330_User_Manual.html | |
| path: SS330_User_Manual.html |